Locus 6625

Sequence ID 2L_DroMel_CAF1
Location 18,617,877 – 18,617,985
Length 108
Max. P 0.513211
window10568

overview

Window 8

Location 18,617,877 – 18,617,985
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 74.22
Mean single sequence MFE -14.08
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.16
Structure conservation index -0.00
SVM decision value -0.04
SVM RNA-class probability 0.513211
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18617877 108 + 22407834
UUAUCAUUUAAAGUUUGGCUUCGAUUUGAUUUAAAGGUCUAACUGCAGCCCUGUUGUUCUCAGUGUUCAUACGUAUUUCUAUAUAUCUUUGCCCCAAACCUUUAUUUU
........((((((((((...(((...(((.((.(((..((..((.(((.(((.......))).)))))....))..))).)).))).)))..))))).))))).... ( -14.40)
>DroSec_CAF1 95344 108 + 1
UUAUCAUGUAGAGUUCGGUUUCAAUUUGAUUUAAAUGUCUAACUGCAGCCCUAUUGUUUUCAGUGUUCAUACGUAUUUCUAUAUAUCUUUCCCCCAAACCUUUAUUUU
.....((((((((..(((((.((.((.(((......))).)).)).)))).(((((....))))).......)...))))))))........................ ( -13.20)
>DroSim_CAF1 96830 108 + 1
UUAUCAUGUAGAGCUCGGCUUCAAUUUGAUUUAAAUGUCUAACUGCAGCCCUGUUAUUUUCAGUGUUCAUACGUAUUUCUAUAUAUCUUUACCCCAAACCUUUAUUUU
.....(((((((((..((((.((.((.(((......))).)).)).))))(((.......))).)))).))))).................................. ( -16.10)
>DroEre_CAF1 94448 83 + 1
-------------CAUG-----GAUUUUG----UGUGUCUACCUGCAGCUCUGUUGGUUUCAGUGUAG---UAUAUUUCUAUAUAUCUUUCCCCCAAACCUUUAUUUU
-------------.(((-----((....(----((((.(((((((.((((.....)))).))).))))---))))).))))).......................... ( -15.10)
>DroYak_CAF1 95537 91 + 1
------------UAAUG-----GUUUUUGUUCGUAUGUCUACCUGUUUCUCCGUUGUUUUCAGUGUACAUACGUAUUUCUAUAUAUCUUUCCCCCAAACCUUUAUUUU
------------....(-----((((......((((((..(((((...(......)....))).))))))))((((....))))...........)))))........ ( -11.60)
>consensus
UUAUCAU_UA_AGCUUGG_UUCGAUUUGAUUUAAAUGUCUAACUGCAGCCCUGUUGUUUUCAGUGUUCAUACGUAUUUCUAUAUAUCUUUCCCCCAAACCUUUAUUUU
............................................................................................................ (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:49 2006