Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,616,726 – 18,616,837 |
Length | 111 |
Max. P | 0.743737 |
Location | 18,616,726 – 18,616,837 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 91.23 |
Mean single sequence MFE | -23.71 |
Consensus MFE | -20.19 |
Energy contribution | -20.98 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.11 |
Mean z-score | -2.17 |
Structure conservation index | 0.85 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18616726 111 - 22407834 UGUGCAAACAUAAUAUGUGUCGCAU---UUAUGCUGUCAAUAUGAUUGAAUGCUCAUAAUAUUCAUAGAUUACGUGUUUACAUUUUGUGCUAAACAUUUGAAACAUACUCCCAU (((.....(((((.(((((..((((---.((..((((.(((((...(((....)))..))))).))))..)).)))).))))).)))))....))).................. ( -17.80) >DroSec_CAF1 94184 114 - 1 UGUGCAAACAUAAUAUGUAUCGCAUGUAUUACGCUGUCAAUAUGAUUGAAUACUCGAAAUAUUAAUAGAUUACGUGUUUACAUUUUAUGCUAAACAUUUGCAUAAUACUUCCAU (((((((((((((.(((((..(((((((.....((((.(((((..((((....)))).))))).))))..))))))).))))).))))).......)))))))).......... ( -27.41) >DroSim_CAF1 95117 114 - 1 UGUGCAAACAUAAUAUGUAUCGCAUGUAUUACGCUGUCAAUAUGAUUGAAUGCUCGAAAUAUUAAUAGAUUACGUGUUUGCAUUUUAUGCUAAACAUUUGCAUCAUACUUCCAU .((((((((((((.(((((..(((((((.....((((.(((((..((((....)))).))))).))))..))))))).))))).))))).......)))))))........... ( -25.91) >consensus UGUGCAAACAUAAUAUGUAUCGCAUGUAUUACGCUGUCAAUAUGAUUGAAUGCUCGAAAUAUUAAUAGAUUACGUGUUUACAUUUUAUGCUAAACAUUUGCAUCAUACUUCCAU .((((((((((((.(((((..(((((((.....((((.(((((...(((....)))..))))).))))..))))))).))))).))))).......)))))))........... (-20.19 = -20.98 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:48 2006