Locus 6623

Sequence ID 2L_DroMel_CAF1
Location 18,615,066 – 18,615,170
Length 104
Max. P 0.524342
window10566

overview

Window 6

Location 18,615,066 – 18,615,170
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 95.51
Mean single sequence MFE -20.60
Consensus MFE -19.77
Energy contribution -19.64
Covariance contribution -0.13
Combinations/Pair 1.09
Mean z-score -1.37
Structure conservation index 0.96
SVM decision value -0.02
SVM RNA-class probability 0.524342
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18615066 104 + 22407834
UUAUUUGCGGCCAAUAUAAAUUCCUCGAGUUCUUUCUGCCAUUUUCAUUUGUAUUUGCGGCGGCUGCUAUUGCUGUUUAUUGUAAUUUUUUAUGGUCCAUAGUC
......((((((..............(((....))).(((..................)))))))))....(((((..((..(((....)))..))..))))). ( -20.87)
>DroSec_CAF1 92517 103 + 1
UUAUUUGCGGCCAAUAUAAAUUCCACGAGUUUUCUCUGCCAUUUUCAUUUGUAUUUGCGGCGGCUGCUAUUGCUGUUUAUUGUAAUU-UUUAUGGUCCAUGGUC
......((((((..............(((....))).(((..................)))))))))....(((((..((..((...-..))..))..))))). ( -19.77)
>DroSim_CAF1 93424 104 + 1
UUAUUUGCGGCCAAUAUAAAUUCCACGAGUUUUCUCCGCCAUUUUCAUUUGUAUUUGCGGCGGCUGCUAUUGCUGUUUAUUGUAAUUUUUUAUGGUCCAUGGUC
......((((((..............(((....))).(((..................)))))))))....(((((..((..(((....)))..))..))))). ( -21.37)
>DroEre_CAF1 91809 104 + 1
UUAUUUGCGGCCAAUAUAAAUUCCUUGAGUUUUCUCUGCCAUUUUUAUUUGUAUUUGCGGCUGCUGCUAUUGCUGUUUAUUGUAAUUUUUUAUGGUCCAUGGUC
......(((((((((((((((....((.((.......)))).....)))))))))...)))))).......(((((..((..(((....)))..))..))))). ( -20.40)
>consensus
UUAUUUGCGGCCAAUAUAAAUUCCACGAGUUUUCUCUGCCAUUUUCAUUUGUAUUUGCGGCGGCUGCUAUUGCUGUUUAUUGUAAUUUUUUAUGGUCCAUGGUC
......((((((..............(((....))).(((..................)))))))))....(((((..((..(((....)))..))..))))). (-19.77 = -19.64 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:47 2006