Locus 6620

Sequence ID 2L_DroMel_CAF1
Location 18,613,249 – 18,613,344
Length 95
Max. P 0.812794
window10562

overview

Window 2

Location 18,613,249 – 18,613,344
Length 95
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 89.60
Mean single sequence MFE -24.40
Consensus MFE -18.94
Energy contribution -19.94
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.78
SVM decision value 0.65
SVM RNA-class probability 0.812794
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18613249 95 - 22407834
CACAGUCACUUCAGCAUUUAAUUAGUGGCCAAUGCUGCUGCUGUUAUCGCUUAUUAUUAAGAUACAACGUGAUAAAACGGCACCAGUA--UACGCGC
....((((((.............))))))..((((((.((((((((((((.((((.....))))....))))))..)))))).)))))--)...... ( -24.32)
>DroSec_CAF1 90677 96 - 1
CACAGUCACUUCAGCAUUUAAUUAGUGACCAAUGCUGCUGCUGUUAUCGCU-GUUAUUAAGAUACAACGUGAUAAAACGGCACCAGUAUAUACGCGC
....((((((.............))))))..((((((.((((((((((((.-(((..........)))))))))..)))))).))))))........ ( -25.82)
>DroSim_CAF1 91141 96 - 1
CACAGUCACUUCAGCAUUUAAUUAGUGGCCAAUGCUGCUGCUGUUAUCGCU-CUUAUUAAGAUACAACGUGAUAAAACGGCACCAGUAUAUACGCGC
....((((((.............))))))..((((((.((((((((((((.-................))))))..)))))).))))))........ ( -24.05)
>DroEre_CAF1 89797 91 - 1
CACAGACACUUCAGCAUUUAAUUAGUGGUGAAUGCU---GCUGUUAUCGCU-GUUAUAAAGAUA--GCGUGAUAAAACGGCACCAACAUAAGCGCGC
.........((((.((((.....)))).))))((.(---(((((((((((.-(((((....)))--))))))))..)))))).))............ ( -22.70)
>DroYak_CAF1 90735 94 - 1
CACAGACACUUCAGCAUUUAAUUAGUGGCGGAUGCUGCUGCUGUUAUCGCU-GUUAUUAAGAUA--GCGUGAUAAAACGGCACCAAUAUACGCGCGC
......((((.............))))(((.(((.((.((((((((((((.-(((((....)))--))))))))..)))))).)).))).))).... ( -25.12)
>consensus
CACAGUCACUUCAGCAUUUAAUUAGUGGCCAAUGCUGCUGCUGUUAUCGCU_GUUAUUAAGAUACAACGUGAUAAAACGGCACCAGUAUAUACGCGC
....((((((.............))))))..((((((.((((((((((((....(((....)))....))))))..)))))).))))))........ (-18.94 = -19.94 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:43 2006