Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,963,612 – 1,963,706 |
Length | 94 |
Max. P | 0.989592 |
Location | 1,963,612 – 1,963,706 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -32.24 |
Consensus MFE | -32.96 |
Energy contribution | -32.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.60 |
Structure conservation index | 1.02 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1963612 94 - 22407834 UCGGCACACCGACGCAGGAUCCUCGUGA-----AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCG------------CCGCCGAAAG (((((.....(((((..((((((((...-----..)).))))))..))))).......((((...((((.....))))..)))).....------------..)))))... ( -30.90) >DroSec_CAF1 6058 94 - 1 UCGGCACACCGACGCAGGAUCCUCGUGA-----AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCACGG------------CCGCCGAAAG (((((...(((((((..((((((((...-----..)).))))))..))))).......((((...((((.....))))..))))...))------------..)))))... ( -31.90) >DroSim_CAF1 10231 94 - 1 UCGGCACACCGACGCAGGAUCCUCGUGA-----AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCACGG------------CCGCCGAAAG (((((...(((((((..((((((((...-----..)).))))))..))))).......((((...((((.....))))..))))...))------------..)))))... ( -31.90) >DroEre_CAF1 15210 105 - 1 UCGGCACACCGACGCAGGAUCCUUGCG------AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCGCCAUCGCCACCGCCGCCGAAAG (((((.....(((((..((((((.((.------...))))))))..))))).......((((...((((.....))))..))))...................)))))... ( -32.10) >DroYak_CAF1 13096 99 - 1 UCGGCACACCGACGCAGGAUCCUUGCGCGUCGCGUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCG------------CCGCCGAAAG (((((.....(((((..((((((.(((((...)).)))))))))..))))).......((((...((((.....))))..)))).....------------..)))))... ( -34.40) >consensus UCGGCACACCGACGCAGGAUCCUCGUGA_____AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCG____________CCGCCGAAAG (((((.....(((((..((((((.(((........)))))))))..))))).......((((...((((.....))))..))))...................)))))... (-32.96 = -32.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:17 2006