| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,607,299 – 18,607,398 |
| Length | 99 |
| Max. P | 0.855080 |
| Location | 18,607,299 – 18,607,398 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -33.02 |
| Consensus MFE | -23.28 |
| Energy contribution | -25.20 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.855080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18607299 99 + 22407834 ------UGCU------UUAAUAAGCGGUGGGUUAUCCUGGGCAUGAUCCGCCACUGAGAUCUCGCUGCUACAGCUGGUCUCGUCCGCUGCAGGCAACCGCUUUUCAAUACG ------((((------(.....((((((((((((((....).))))))))))...((((((..((((...)))).))))))....)))..)))))................ ( -33.80) >DroSec_CAF1 84861 99 + 1 ------CGUU------UUAAUAAGCGAUGGGUUAUCCUGGGCAUGAUCCGUCACUGAGAUCUCGCUGCUACAGCUGGUCUCGUCCGCUGCGGGCAACCGCUUUUCAAUACG ------....------......((((((((((((((....).))))))))))...((((((..((((...)))).))))))....)))((((....))))........... ( -37.40) >DroSim_CAF1 85312 99 + 1 ------CGUU------UUAAUAAGCGAUGGGUUAUCCUGGGCAUGAUCCGUCACUGAGAUCUCGCUGCUACAGCUGGUCUCGUCCGCUGCGGGCAACCGCUUUUCAAUUCG ------....------......((((((((((((((....).))))))))))...((((((..((((...)))).))))))....)))((((....))))........... ( -37.40) >DroEre_CAF1 83936 99 + 1 ------CACU------UUAAUAAGCGAUGGGUUAUCCUGGGUGUUAUCCGUCACUGAGAUCUCGCUGCUACCGCUGGUCUCGUCCGCUGCGGGCAAUCGCUUUUCAAUACG ------....------.....(((((((((((...(....)....)))))))...((((((..((.......)).))))))(((((...)))))....))))......... ( -26.60) >DroWil_CAF1 163795 109 + 1 UAUUUUCAUCGGUGGGCUUUUCAUCGCUGGCCA--CAUGUGGAUUAUCUGUAACAGAUAAUUCACUGCUGCAGCUGUUCUCAUCCACGGCAGGCACACGCUUAUCAUUACG ..........(((.(((........))).))).--...((((((((((((...))))))))))))((((...(((((........))))).))))................ ( -32.10) >DroYak_CAF1 84582 99 + 1 ------CACC------UUAAUAAGCGAUAAGUUAUCCUGGGUAUUAUCCGUCACUGAGACCUCGCUGCUACAGCUGGUCUCGUCCGCUGCGGGCAACCGCUUCUCAAUACG ------....------......((((............((((...))))......((((((..((((...)))).))))))...))))((((....))))........... ( -30.80) >consensus ______CACU______UUAAUAAGCGAUGGGUUAUCCUGGGCAUGAUCCGUCACUGAGAUCUCGCUGCUACAGCUGGUCUCGUCCGCUGCGGGCAACCGCUUUUCAAUACG ......................((((((((((((((....).))))))))))...((((((..((((...)))).))))))....)))((((....))))........... (-23.28 = -25.20 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:41 2006