Locus 6617

Sequence ID 2L_DroMel_CAF1
Location 18,603,140 – 18,603,241
Length 101
Max. P 0.952778
window10559

overview

Window 9

Location 18,603,140 – 18,603,241
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 74.93
Mean single sequence MFE -24.79
Consensus MFE -11.91
Energy contribution -11.92
Covariance contribution 0.00
Combinations/Pair 1.47
Mean z-score -2.29
Structure conservation index 0.48
SVM decision value 1.43
SVM RNA-class probability 0.952778
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18603140 101 - 22407834
AAAGGUUUGGGUGGGGCAUCGCCAGUAUCCAUUUUGGCCUUCUUUUCCGCACCACCUCCUCCUCCACCACCGGCGCCACCACCUCUUUCUCUUGACCUUUC
(((((((.(((((((((...(((((........))))).........................((......)).))).)))))).........))))))). ( -26.60)
>DroSec_CAF1 80702 101 - 1
AAGGGUUUGGGUGGGGCAUCGCCAUUAUCCAUUUUGGCCUUCUUUUCCACACCACCUCCUCCUCCACCACCGGCGCCACCACCUCUUUCUCUUGACCGCUC
(((((...(((((((((...((((..........)))).........................((......)).))).))))))....)))))........ ( -25.10)
>DroSim_CAF1 80659 100 - 1
AAGGGUUUGGG-GGAGCAUCGCCAUUAUCCAUUUUGGCCUUCUUUUCCGCACCACCUCCUCCGCCACCACCAUUGCCACCACCUCUUUCUCUUGAUCGCUC
...(((.(((.-.(((.(..((((..........))))..))))..))).)))................................................ ( -18.00)
>DroEre_CAF1 79774 83 - 1
AAGGGUUUUGGUGGAGCAUCGCCAGAAUCCAUUUUGGCCUUUUUUUCCACUCCACCUCC------------------ACCCACUCUUUCCUUUGAUCGCUC
..((((...(((((((....(((((((....)))))))...........)))))))...------------------)))).................... ( -24.46)
>DroYak_CAF1 80405 98 - 1
AAAGGUUUUGGUGGGGCAUCGCCAGAAUCCAUUUUGGCCUUCUUUUCCACUGCACCUCCUCCUCCACCGCC---GACACCACCUCUUUCUCUUGACCGCUC
...(((.(((((((((....(((((((....))))))).............(......)....)).)))))---)).)))..................... ( -21.50)
>DroAna_CAF1 73731 95 - 1
AGGGGUUUCGUCGAGGAGUCGCCUAUGUCCAAUUUGGCUUUCUUAUCCUGGGAGCCC------CCGCCGCCUGCUCCAGAUCCUCGUUCUCUGGAGCGCUC
.((((((((...((.(((..(((............)))...))).))...)))))))------)....((..((((((((.........)))))))))).. ( -33.10)
>consensus
AAGGGUUUGGGUGGGGCAUCGCCAGUAUCCAUUUUGGCCUUCUUUUCCACACCACCUCCUCCUCCACCACC_GCGCCACCACCUCUUUCUCUUGACCGCUC
..((((....((((((....(((((........)))))......))))))...))))............................................ (-11.91 = -11.92 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:40 2006