Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,600,859 – 18,600,956 |
Length | 97 |
Max. P | 0.990906 |
Location | 18,600,859 – 18,600,956 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -26.52 |
Energy contribution | -26.32 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.93 |
Structure conservation index | 0.88 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18600859 97 - 22407834 AUGAUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC ....................((((((((((...((((((((...(((((((......))))))).....)))))))).....)))))...).)))). ( -25.60) >DroSec_CAF1 77565 97 - 1 AUGGUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC .((((.(((((((.......)))))(((((...((((((((...(((((((......))))))).....)))))))).....)))))...)))))). ( -29.30) >DroSim_CAF1 78357 97 - 1 AUGGUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC .((((.(((((((.......)))))(((((...((((((((...(((((((......))))))).....)))))))).....)))))...)))))). ( -29.30) >DroEre_CAF1 77539 97 - 1 GUGGUUGUGAUUAAUCUUAUUGGCCAGCGACAGCUGGAAAUUGUAGGCGUUCGCUUGGACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC ((((.(((((..(((((......(((((....)))))..((((.((((((((....)))))))).))))......)))))..))))).))))..... ( -36.00) >DroYak_CAF1 78017 97 - 1 AUGGUUGUGAUUAUUCUUAUUGGCCUGCGACAGCUGGAAAUUGUAGGCGUUCUCUUGGACGUCUUUAGUGUUUCCGGAUUUCUCGCAAACGUACCAC .(((((((((....)).........(((((...((((((((...((((((((....)))))))).....)))))))).....))))).))).)))). ( -30.80) >consensus AUGGUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC .((((.(((.....((.....))...((((...((((((((...(((((((......))))))).....)))))))).....))))...))))))). (-26.52 = -26.32 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:39 2006