Locus 6615

Sequence ID 2L_DroMel_CAF1
Location 18,599,700 – 18,599,820
Length 120
Max. P 0.567721
window10557

overview

Window 7

Location 18,599,700 – 18,599,820
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.67
Mean single sequence MFE -43.92
Consensus MFE -28.20
Energy contribution -28.85
Covariance contribution 0.65
Combinations/Pair 1.36
Mean z-score -1.39
Structure conservation index 0.64
SVM decision value 0.07
SVM RNA-class probability 0.567721
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18599700 120 - 22407834
ACCUACCGGAUGGGGAUUGGUGGCGUUUCCUUACCAGCAGCAUGAUAAACACCCUGCAACUGCUGGUUUGCCUGGUGGGCGCCGCUCUGUUCGCCAAGACGUCAGUGAUUAUUUUGGCCA
.((........))((((.(((((((((..((.((((((((((.(........).)))...)))))))......))..)))))))))..))))(((((((.(((...)))..))))))).. ( -39.60)
>DroVir_CAF1 117746 120 - 1
AUCUGCCCGAUGGGAAAUGGUGGCGCUUUCUGGUCAGCAGCCUAAUCAAUACCUGCAUGUUGCUGGUGUGCCUAGUGGGCGCCGCCCUCUUUGCCAAGACGUCAGUGCUUAUUUUGGGAA
.....(((((.((.(((.(((((((((..(((((((.((((...((((.....)).))...)))).)).))).))..)))))))))...))).))(((((....)).)))...))))).. ( -43.00)
>DroPse_CAF1 117686 120 - 1
CCCUGCCCGACGGCGAUUGGUGGCGCUUCCUCACCAGCAGCAUCAUCAACACCUGCCAGCUCCUGGUCUGCCUAGUGGGUGCCGCACUCUUUGCCAAAACGUCAGUGCUUAUUUUGGGUA
...(((((((.(((((..(((((((((..((.(((((.(((..((........))...))).)))))......))..)))))))).)...)))))...((....)).......))))))) ( -38.70)
>DroMoj_CAF1 111790 120 - 1
AUCUGCCCGAUGGCAAAUGGUGGCGCUUCCUGGUUAGCAGCGGCAUCAAUACAAGUAUGCUGCUGGUCUGCCUGGUGGGCGCCGCUCUCUUUGCCAAAACGUCGGUGCUUAUUUUGGGCA
....(((((((((((((.((((((((((((.(((.(.((((((((((.......).))))))))).)..))).)).))))))))))...)))))))..((....)).......)))))). ( -55.60)
>DroAna_CAF1 70601 120 - 1
ACUUGAAGGACGGGCCGUGGUGGUGCUUCCUCAUCAGCAGCCUGCUGAACACCCUCCAGUUGCUGGUCUGCUUGGUGGGGGCGGCCCUCUUCGCCAAGACGUCAGUAAUUAUUUUGGCCA
....(((((..(((((((((.....)).((((((((((((((.((((.........))))....)).)))).))))))))))))))))))))(((((((.(........).))))))).. ( -47.90)
>DroPer_CAF1 116344 120 - 1
CCCUGCCCGACGGCGAUUGGUGGCGCUUCCUCACCAGCAGCAUCAUCAACACCUGCCAGCUCCUGGUCUGCCUAGUGGGUGCCGCACUCUUUGCCAAAACGUCAGUGCUUAUUUUGGGUA
...(((((((.(((((..(((((((((..((.(((((.(((..((........))...))).)))))......))..)))))))).)...)))))...((....)).......))))))) ( -38.70)
>consensus
ACCUGCCCGACGGCGAUUGGUGGCGCUUCCUCACCAGCAGCAUCAUCAACACCUGCCAGCUGCUGGUCUGCCUAGUGGGCGCCGCACUCUUUGCCAAAACGUCAGUGCUUAUUUUGGGCA
...(((((((.((.((..(((((((((..((.(((((((((.................)))))))))......))..)))))))))....)).))...((....)).......))))))) (-28.20 = -28.85 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:38 2006