| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,589,953 – 18,590,048 |
| Length | 95 |
| Max. P | 0.640491 |
| Location | 18,589,953 – 18,590,048 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.99 |
| Mean single sequence MFE | -37.61 |
| Consensus MFE | -27.44 |
| Energy contribution | -28.09 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18589953 95 - 22407834 UGGUCCGGGUCC---AUCAAAUCCCGGUCCGGGCAUCCGUUGGUAAGGCGGUCUAAAAGGACCUGGUCCGGGUCCAUUCCAUCCCCGGCCUCGUCCAC .((.(((((...---.......))))).))((((..((........))..))))....((((..((.(((((...........)))))))..)))).. ( -37.10) >DroSec_CAF1 66363 95 - 1 UGGUCCGGGUCC---AUCAAAUCCCGGUCCGGGCAUCCGUUGGUAAGGCGGUCUAAAAGGGCCUGGUCCGGGUCCAUUCCAUCCCCGACCUCGUCCAC .((((.(((...---.......(((((.((((((..(((((.....))))).........)))))).)))))..........))).))))........ ( -40.05) >DroSim_CAF1 67284 95 - 1 UGGUCCGGGUCC---AUCAAAUCCCGGUCCGGGCAUCCGUUGGUAAGGCGGUCCGAAAGGGCCUGGUCCGGGUCCAUUCCAUCCCCGACCUCGUCCAC .((((.(((...---.......(((((.((((((..(((((.....))))).((....)))))))).)))))..........))).))))........ ( -45.95) >DroEre_CAF1 65912 95 - 1 UGGUCCGGGACC---AUCAAAUCCCGGUCCGGGCAUCCGUUGGUAAGGCGGUCUGAAAGGACCUGGUCCGGGUGCAUUCCAUCCCCGACCUCUUCCAC .((((.((((..---.......(((((.(((((...(((((.....)))))(((....)))))))).))))).........)))).))))........ ( -40.47) >DroYak_CAF1 66932 95 - 1 UGGUCCGGGUCC---AUCAAAUCCCGGUCCGGGCAUUCGUUGGUAAGGCGGUCUAAAAGGACCUGGUCCGGUUGCAUUCCAUCCCCGACCCCUUCCCC ..(((((((.((---..........))))))))).......((.((((.((((.....((((...))))((.......))......)))))))).)). ( -31.80) >DroMoj_CAF1 98840 83 - 1 UGGCCCCUGUCCGCCAUCAAA---GGGGCCGGGCAUACGUUGAUAAUUGGGUCUAUACGGUCCCG------------ACCAGCCGCGACCACGGCCAC .(((((((............)---)))))).(((....((((....(((((.((....)).))))------------).......))))....))).. ( -30.30) >consensus UGGUCCGGGUCC___AUCAAAUCCCGGUCCGGGCAUCCGUUGGUAAGGCGGUCUAAAAGGACCUGGUCCGGGUCCAUUCCAUCCCCGACCUCGUCCAC .((.(((((.............))))).))((((..((........))..))))....((((..((((.(((..........))).))))..)))).. (-27.44 = -28.09 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:34 2006