| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,588,343 – 18,588,455 |
| Length | 112 |
| Max. P | 0.655731 |
| Location | 18,588,343 – 18,588,455 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.18 |
| Mean single sequence MFE | -41.60 |
| Consensus MFE | -25.52 |
| Energy contribution | -26.30 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18588343 112 + 22407834 --AGUAUUAAUGGCUUCACGAGCUAUCUGGAUGGUGGCAAGCUGCCCUUCGACAUCAACGAUUUCAAGCGGGACUCGA------AAGAUAGGGGAAGUGCCAUUGAGGUGAUUGGAUCGC --....((((((((.......((((((.....))))))..(((.(((((....(((..(((.(((.....))).))).------..)))))))).))))))))))).(((((...))))) ( -30.80) >DroVir_CAF1 99539 120 + 1 GCGGUCUCAAUGGCUUCGCCAGUUACCUGGAUGGCGGUCAGCUGCCGUUCGACAUCAACGACUUUAAGCGCGAGUCUAGCGGCAAGGAUCGCGGCAGUGCCAUUGAGGUGAUUGGCUCGC ((((((.....)))...(((((((((((.((((((((((...(((((((.(((.((..((........)).))))).)))))))..))))((....)))))))).))))))))))).))) ( -54.40) >DroGri_CAF1 79352 120 + 1 GCGGUCUCAAUGGUUUUGCCAGCUAUUUGGACGGUGGUCAACUGCCGUUCGAUAUAAACGACUUCAAGCGUGAGUCGAGUGGCAAGGAUAGGGGCAGCGCCAUUGAGGUUAUUGGGUCGC ((((((((((((((.(((((..((((((((((((..(....)..))))))........((((((.......))))))........)))))).))))).))))))))))........)))) ( -47.90) >DroWil_CAF1 142361 112 + 1 --GAUUUGAAUGGGUUUUCCAGCUAUUUGGAUGGUGGCAAGCUGCCCUUUGACAUAAACGAUUUCAAGCGAGAUACAC------GUGAUCGAGGGAGUGCCAUUGAAGUAAUUGGCUCUC --.(((..(((((.(.....).)))))..)))((..(....)..))(((((((((.....(((((....)))))....------))).))))))(((.((((.(......).)))).))) ( -29.60) >DroMoj_CAF1 97049 120 + 1 GCGGUCUCAAUGGUUUUGCCAGCUAUCUGGAUGGCGGCCAGCUGCCGUUUGAUAUCAACGACUUUAAGCGAGAGUCGAGCGGCAAGGAUCGUGGCAGCGCCAUUGAGGUGAUUGGUUCGC .....(((((((((.(((((((((((....)))))((((...(((((((((....)).(((((((.....)))))))))))))).)).)).)))))).)))))))))((((.....)))) ( -49.00) >DroAna_CAF1 60221 112 + 1 --GGCUUGAACGGCUUUUCCAGUUACCUGGACAGCGGAAAGCUGCCGUUCGACAUAAACGACUUCAAGCGGGACUCGA------AGGACCAGGGCAGCGCCAUAGAGGUAAUCGGAUCUC --.(((((((((((...(((((....))))).(((.....))))))))(((.......)))..))))))((((..(((------...(((..(((...))).....)))..)))..)))) ( -37.90) >consensus __GGUCUCAAUGGCUUUGCCAGCUAUCUGGAUGGCGGCAAGCUGCCGUUCGACAUAAACGACUUCAAGCGAGAGUCGA______AGGAUCGGGGCAGCGCCAUUGAGGUGAUUGGAUCGC ...(((((((((((.(((((........(((((((((....)))))))))........((........))......................))))).)))))))))))........... (-25.52 = -26.30 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:33 2006