Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,962,926 – 1,963,118 |
Length | 192 |
Max. P | 0.827833 |
Location | 1,962,926 – 1,963,045 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.20 |
Mean single sequence MFE | -40.00 |
Consensus MFE | -24.75 |
Energy contribution | -27.28 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.09 |
Mean z-score | -1.61 |
Structure conservation index | 0.62 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1962926 119 - 22407834 AUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA-AUACUGCUCGCAUGUCCUUGAGCGCGUGCCGUGCGUCCUUAGGAGACCUUUGGGCGUCUUUAAAAGGGGGCGUAGCGCCUGC .....((((((((.......(((.((((((((((((.-....)))..))))))))))))(((((...)))))((((..(((...)))..))))...........))))))))........ ( -43.00) >DroSec_CAF1 5350 119 - 1 AUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA-AUACUGCUCGCAUGUCCUUGAGCGCGUGCCGCGCGUCCUUAGGAGACCUUUGGGCGUCUUCAAAAGGGGGCGUAGCGCCUGC ........((((((..........((((((((((((.-....)))..))))))))))))).))((((..(((.(((((.(((((((.....).))))))..))))).)))..)))).... ( -47.10) >DroSim_CAF1 9540 100 - 1 AUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUG--------------------CUUGAGCGCGUGCCGCGCGUCCUUAGGAGACCUUUGGGCGUCUUCAAAAGGGGGCGUAGCGCCUGC .....((((((((.........((.((.((((((--------------------(....)))))))))))((((((..(((...)))..)))))).........))))))))........ ( -38.80) >DroEre_CAF1 14546 119 - 1 AUUAAUUUGCCUCAAUCCUGUCGCAGGACAUGUGCAA-AUACCACUCGCAUGUUCUUGAGCGCGUGCCGCGCGUCCUUAGGCGACCUUUGGGCGUCUUCAAAAGGGGGCGUGGCGCCUGC ........((((((((((((...)))))((((((...-........))))))...))))).))(((((((((.((((((((((.((....)))))))....))))).))))))))).... ( -49.60) >DroYak_CAF1 12379 94 - 1 AUUAAUAUGCCUCAAUCCUGUCGCAGGACAUGUGCAA-AUACCACUCGCAUGUCCUUGAGCGCGUGCC-------------------------GUCUUCAAAAGUGGGCGUAGCGCCUGC .......(((..((....))..)))(((((((((...-........)))))))))...((.((((..(-------------------------((((........)))))..)))))).. ( -28.90) >DroAna_CAF1 35553 96 - 1 AUUAA------------------CAGGACAUGUGCAAAAUCCUACCCGCAUGUCCUUGAGCGCGUGCCUCGCGUCCUUAGAAAA----UAGGCGUCAUCC--GGGGGGCGUAGCGCCUGC .....------------------.((((((((((............))))))))))...(((.((((..(((.((((..((..(----(....))..)).--.)))))))..)))).))) ( -32.60) >consensus AUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA_AUACUACUCGCAUGUCCUUGAGCGCGUGCCGCGCGUCCUUAGGAGACCUUUGGGCGUCUUCAAAAGGGGGCGUAGCGCCUGC ....................(((.((((((((((............)))))))))))))((((.(((.....((((..((.....))..))))((((((....))))))))))))).... (-24.75 = -27.28 + 2.53)
Location | 1,962,966 – 1,963,085 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -41.47 |
Consensus MFE | -30.24 |
Energy contribution | -31.52 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.12 |
Structure conservation index | 0.73 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1962966 119 - 22407834 UUUGGAGGCGUAUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA-AUACUGCUCGCAUGUCCUUGAGCGCGUGCCGUGCGUCCUUAG ....((((((((((.((((((((((...)))))).))))....)))))))))).......(((.((((((((((((.-....)))..))))))))))))(((((...)))))........ ( -44.40) >DroSec_CAF1 5390 119 - 1 UUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA-AUACUGCUCGCAUGUCCUUGAGCGCGUGCCGCGCGUCCUUAG ....((((((((((.((((((((((...)))))).))))....)))))))))).......(((.((((((((((((.-....)))..))))))))))))(((((...)))))........ ( -46.30) >DroSim_CAF1 9580 100 - 1 UUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUG--------------------CUUGAGCGCGUGCCGCGCGUCCUUAG ....((((((((((.((((((((((...)))))).))))....))))))))))......(.(((.((.((((((--------------------(....)))))))))..))).)..... ( -39.70) >DroEre_CAF1 14586 119 - 1 UUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUUUGCCUCAAUCCUGUCGCAGGACAUGUGCAA-AUACCACUCGCAUGUUCUUGAGCGCGUGCCGCGCGUCCUUAG ...(((.(((((.....((((((.....((((((((.((((.....))))......((((...))))))))))))..-))))))...((((((.(....).))))))))))).))).... ( -42.80) >DroYak_CAF1 12406 107 - 1 UUUGGAGGCGUGCACGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUCCUGUCGCAGGACAUGUGCAA-AUACCACUCGCAUGUCCUUGAGCGCGUGCC------------ ..(((.((((..(((....)))..))))((((((((.(((.......)))......((((...))))))))))))..-...)))...((((((.(....).)))))).------------ ( -38.20) >DroAna_CAF1 35587 102 - 1 UUUGGAGGCGUGUUCGCUGGUGUGUGUCGCAUAUGUAGCAAUUAA------------------CAGGACAUGUGCAAAAUCCUACCCGCAUGUCCUUGAGCGCGUGCCUCGCGUCCUUAG ....((((((((((((((((((((.....))))).))))......------------------.((((((((((............)))))))))).))))))..))))).......... ( -37.40) >consensus UUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA_AUACUACUCGCAUGUCCUUGAGCGCGUGCCGCGCGUCCUUAG ...((..((((((((((((((((((...)))))).)))).........................((((((((((............)))))))))).)))))))).))............ (-30.24 = -31.52 + 1.28)
Location | 1,963,006 – 1,963,118 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -20.81 |
Energy contribution | -23.28 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.12 |
Mean z-score | -1.53 |
Structure conservation index | 0.63 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1963006 112 - 22407834 -CCUUGUGCCACAUUCCUAGC-----UCGC-CUCGCAGUUUUUGGAGGCGUAUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA-AU -.....(((.((((((((.((-----....-...((((......((((((((((.((((((((((...)))))).))))....))))))))))....)))).)))))).))))))).-.. ( -35.40) >DroSec_CAF1 5430 111 - 1 --CGUGUGCCACAUUCCUAGC-----UCUC-CUCGCAGUUUUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA-AU --....(((.((((((((.((-----....-...((((......((((((((((.((((((((((...)))))).))))....))))))))))....)))).)))))).))))))).-.. ( -35.40) >DroSim_CAF1 9606 108 - 1 UCCUUGUUCCACAUUCCUAGC-----UCGC-CUCGCAGUUUUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUG------ .........(((((((((.((-----....-...((((......((((((((((.((((((((((...)))))).))))....))))))))))....)))).)))))).)))))------ ( -33.50) >DroEre_CAF1 14626 109 - 1 ----UGUUCCACAUUCCUAGC-----UCGC-CUCGCACUUUUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUUUGCCUCAAUCCUGUCGCAGGACAUGUGCAA-AU ----.....((((...(((((-----.(((-(((.((.....)))))))).....)))))))))....((((((((.((((.....))))......((((...))))))))))))..-.. ( -35.70) >DroYak_CAF1 12434 118 - 1 -CUUUAUUCUAGAUUCCUAGCCUAGAUCGCCCUGGCAUCUUUUGGAGGCGUGCACGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUCCUGUCGCAGGACAUGUGCAA-AU -.......((((....))))((.((((.((....))))))...)).((((..(((....)))..))))((((((((.(((.......)))......((((...))))))))))))..-.. ( -37.80) >DroAna_CAF1 35627 89 - 1 -CC-UGAUCCAGAUUUCUAAU-----AUAU-U-----UUUUUUGGAGGCGUGUUCGCUGGUGUGUGUCGCAUAUGUAGCAAUUAA------------------CAGGACAUGUGCAAAAU -..-.((..((.((((((((.-----....-.-----....)))))((((....))))))).))..))((((((((..(......------------------..).))))))))..... ( -19.60) >consensus _CCUUGUUCCACAUUCCUAGC_____UCGC_CUCGCAGUUUUUGGAGGCGUGUUCGCUGGUGUGCGUCGCAUAUGUAGCAAUUAAUAUGCCUCAAUUCUGUCGCAGGACAUGUGCAA_AU .........(((((((((.((.......((....))........((((((((((.((((((((((...)))))).))))....)))))))))).........)))))).)))))...... (-20.81 = -23.28 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:16 2006