Locus 6609

Sequence ID 2L_DroMel_CAF1
Location 18,585,173 – 18,585,267
Length 94
Max. P 0.599058
window10549

overview

Window 9

Location 18,585,173 – 18,585,267
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 85.56
Mean single sequence MFE -30.42
Consensus MFE -23.71
Energy contribution -23.34
Covariance contribution -0.37
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.599058
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18585173 94 + 22407834
GUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGAUGAAGGAAGUCCGGACGGAAUGGUCAUGGAUGUAGAAGUGGGACUGGGGGA
...(((((.((((((....)))))).(((((..(((..((((((.......)))))).))).)))))....))))).................. ( -31.50)
>DroSec_CAF1 61599 93 + 1
GUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAAGCGAGCCGGAUGAAGGAAGUCCGGGCGGACUGGUCAUGGAUGUAGAAGUGGGACUGG-GGA
......((.(..(((..((((((((..((((.......((((((.......)))))))))).))))))))..............)))..)-.)) ( -32.00)
>DroSim_CAF1 62487 93 + 1
GUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGAUGAAGGAAGUCCGGGCGGACUGGUCGUGAAUGUAGAAGUGGGACUGG-GGA
..(((....((((((....)))))).)))....(((..((((((.......)))))).))).(..(((.(............).)))..)-... ( -34.80)
>DroYak_CAF1 62087 82 + 1
GUGGCGUCGCGGGUCAAAUGACCAGAGCCGUAACCUAGCCUGAUGGAGAAAGUCCGGACGGAAUGGUCAUGAAAGUGGAACU------------
..(((.((...((((....)))).)))))...(((...((...((((.....))))...))...)))(((....))).....------------ ( -23.40)
>consensus
GUGGCGUCGCUGGUCAAAUGGCCAGAGCCGUAACCGAGCCGGAUGAAGGAAGUCCGGACGGAAUGGUCAUGAAUGUAGAAGUGGGACUGG_GGA
.((((.......)))).(((((((...((((.......((((((.......))))))))))..)))))))........................ (-23.71 = -23.34 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:30 2006