Locus 6607

Sequence ID 2L_DroMel_CAF1
Location 18,553,161 – 18,553,266
Length 105
Max. P 0.589458
window10546

overview

Window 6

Location 18,553,161 – 18,553,266
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 80.48
Mean single sequence MFE -21.40
Consensus MFE -11.76
Energy contribution -10.64
Covariance contribution -1.12
Combinations/Pair 1.29
Mean z-score -1.91
Structure conservation index 0.55
SVM decision value 0.11
SVM RNA-class probability 0.589458
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18553161 105 + 22407834
UCUUCAUUCGAAGACGCUUUUGUCUUCUGUUGGCAAAUGUUUCUGACAGGCGAAAGGAGCUUUACCAUUAACCAUUAAUAUUUAUUAUGGAAUAAAUGUACAUAU
(((((....))))).((((((.((.(((((..(.((....)))..))))).)).)))))).................(((((((((....)))))))))...... ( -22.40)
>DroSec_CAF1 30400 93 + 1
UCUUCAUUCGAAGACGCUUUUGUCUUCAGUUGGCAAAUGUUUCUGACAGGCGAAAGGAGCUUUAC--------AUUAAUAUUUAUUAUGAAAUAUAUGU----AU
(((((....)))))..(((((((((((((..(((....))).)))).)))))))))......(((--------((..((((((......))))))))))----). ( -22.50)
>DroSim_CAF1 30998 93 + 1
UCUUCAUUCGAAGACGCUUUUGUCUUCAGUUGGCAAAUGUUUCUGACAGGCGAAAGGAGCUUUAC--------AUUAAUAUUUAUUAUGAAAUAUAUGU----AU
(((((....)))))..(((((((((((((..(((....))).)))).)))))))))......(((--------((..((((((......))))))))))----). ( -22.50)
>DroEre_CAF1 29935 93 + 1
UUUUCAUUCAAAGACGCCUUUGUCUUUUGUUGGCAAAUGUUUCUGACAGCCG-AAGAAGCCUUACA---GGCCAUUAAUAUUUAUUAUGAAAUGC--------CA
.(((((((((((((((....)))))))..(((((...((((...))))))))-).)))(((.....---)))...............)))))...--------.. ( -17.40)
>DroYak_CAF1 30210 91 + 1
UGCUCAUUCGAAGACGCUUUUGUCUUU---UGGCAAAUGUUUUUGACAAGCGAAAGGAGCUUUAAA---AACCAUUAAUAUUUAUAAUAGAAUAU--------UA
.((((..(((((((((..((((((...---.)))))))))))))))....(....)))))......---......((((((((......))))))--------)) ( -22.20)
>consensus
UCUUCAUUCGAAGACGCUUUUGUCUUCAGUUGGCAAAUGUUUCUGACAGGCGAAAGGAGCUUUAC______CCAUUAAUAUUUAUUAUGAAAUAUAUGU____AU
...(((...(((((((....)))))))...))).....((((((..........))))))..................(((((......)))))........... (-11.76 = -10.64 +  -1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:27 2006