Locus 6606

Sequence ID 2L_DroMel_CAF1
Location 18,552,032 – 18,552,141
Length 109
Max. P 0.500000
window10545

overview

Window 5

Location 18,552,032 – 18,552,141
Length 109
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 81.04
Mean single sequence MFE -27.46
Consensus MFE -15.82
Energy contribution -16.54
Covariance contribution 0.72
Combinations/Pair 1.32
Mean z-score -1.79
Structure conservation index 0.58
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18552032 109 - 22407834
UGUCCCGCGUUCGACUGUGCUAUGGAAAAUACUAUUU----GCUUGCACAUGAUAUGUUUGAGAAAAACAGUUUAAUUCAUAUUCCUAAAGCGUAGUACGGCCUAAUGGACAC
(((((...(..((((((((((..((((.........(----(....)).((((..(((((.....))))).......)))).))))...)))))))).))..)....))))). ( -23.60)
>DroSec_CAF1 29320 107 - 1
UGUCCCAGGUUCAACUGUGCUAUGGAAAAUACUAUUU----GCUUGC--AUGAUGUGUUUGAGAAAAACAGUUCAAUUCAUAUUCCUAAAGCGUAGUACGGCCUAAUGGACAC
(((((.(((.....(((((((((((......))....----((((..--..((((((.(((((........)))))..))))))....))))))))))))))))...))))). ( -27.20)
>DroSim_CAF1 29894 107 - 1
UGGCCCGGGUUCAACUGUGCCAUGGAAAAUACUAUUU----GCUUGC--AUGAUGUGUUUGAGAAAAGCAGUUUAAUUCAUAUUCCUAAAGCGUAGUACUGCCUAAUGAACAC
((((.(((......))).)))).((....((((((..----((((..--..((((((.(((((........)))))..))))))....))))))))))...)).......... ( -23.30)
>DroEre_CAF1 28814 109 - 1
UGGCACAGGUUCUACUGUGCUAUGGAAAAUACAAAUAUGGAAAAU-A--AUAAUACGUUCGAGGAA-ACAGUUCAAUUUAUAUUCCUAAAGCGCAGUAAGGCCUAAUGGCCAC
((((..((((..(((((((((..((((.(((........(((..(-(--....))..)))..(...-.).........))).))))...)))))))))..))))....)))). ( -33.40)
>DroYak_CAF1 29115 101 - 1
----CCAGGCUCAGCUGUGCUAUGCAAAAUACAAAUU----GCUU-C--GUCAUACGUUCGAGAAA-ACAGUGCAAUUCGUAUUGCUAAAGCGUAGUAGGGCCUAAUGGACAC
----((((((((.((((((((..(((..((((.((((----((((-(--(.........))))...-.....)))))).)))))))...)))))))).)))))...))).... ( -29.80)
>consensus
UGGCCCAGGUUCAACUGUGCUAUGGAAAAUACUAUUU____GCUUGC__AUGAUAUGUUUGAGAAAAACAGUUCAAUUCAUAUUCCUAAAGCGUAGUACGGCCUAAUGGACAC
(((((.(((((..((((((((..(((..........................(((((.(((((........)))))..))))))))...))))))))..)))))...))))). (-15.82 = -16.54 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:26 2006