Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,549,074 – 18,549,182 |
Length | 108 |
Max. P | 0.558868 |
Location | 18,549,074 – 18,549,182 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.19 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -21.47 |
Energy contribution | -21.22 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.18 |
Mean z-score | -1.55 |
Structure conservation index | 0.81 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18549074 108 - 22407834 UUAUUUUGGACCUUUGUGUGCUUAA-ACAAAUAUUUUUCUUGUCAUGUUUCAAAGUGCUGUGUGGUUGGUGCAGAUUUUGCUUUUGCAACUGUUUUAGCUAUGUGAUUU .......((..(((((...((....-((((.........))))...))..)))))..))(..(((((((.((((...((((....)))))))).)))))))..)..... ( -20.40) >DroSim_CAF1 26956 108 - 1 UUAUUUUGGACCUUUGUGUGCUUAA-ACCAAUAUUUUUCUUGUCAUGUUUCAAAGUGCAGUGUGGCUGGUGCAGAUUUUGCUGUUGCAACUGUUUUGGCUGUGCGGUUU .......(((((....((..(((((-((..(((.......)))...))))..)))..))(((..((..(.((((...((((....)))))))).)..))..)))))))) ( -27.40) >DroEre_CAF1 26006 109 - 1 UUAUUUUGGACCUUUGUGUGCUUAAAACCAAUAAUUUUCUUGUCAGGUUGCAGAGUACAGUGUGGUUGGUGCAGAUUUUGCUGUUGCAACUGUUUUGGCUGUGCGGUUU .......(((((....(((((((..((((.((((.....))))..))))...)))))))(((..((..(.((((...((((....)))))))).)..))..)))))))) ( -31.20) >DroYak_CAF1 26149 109 - 1 UUAUUUCGGACCUUUGUGUGCUUAAAACCAAUAAUUUUCUUGUCAUGUUUCAGAGUGCAGUGUGGUUGGUGCAGAUUUUGCUGCUGCAACUGUUUUGGCUGUGCGGUUU .......(((((....((..(((.((((..((((.....))))...))))..)))..))(((..((..(.((((...((((....)))))))).)..))..)))))))) ( -27.00) >consensus UUAUUUUGGACCUUUGUGUGCUUAA_ACCAAUAAUUUUCUUGUCAUGUUUCAAAGUGCAGUGUGGUUGGUGCAGAUUUUGCUGUUGCAACUGUUUUGGCUGUGCGGUUU .......(((((.....((((((..(((..................)))...)))))).(..((((..(.((((...((((....)))))))).)..))))..)))))) (-21.47 = -21.22 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:25 2006