Locus 6604

Sequence ID 2L_DroMel_CAF1
Location 18,547,498 – 18,547,595
Length 97
Max. P 0.806374
window10543

overview

Window 3

Location 18,547,498 – 18,547,595
Length 97
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 92.23
Mean single sequence MFE -28.08
Consensus MFE -25.27
Energy contribution -24.90
Covariance contribution -0.37
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.90
SVM decision value 0.63
SVM RNA-class probability 0.806374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18547498 97 + 22407834
UCUUCUGCUUGUGCUCCAGUGUUAUUGCGCUGAUUGCGCUUGUCGCCGAAAUGUUCGGUUAGGAGUCUCCACUUCCAC------------CCCAGAUUCCACCGCCUCC
......((..((((..((((((....))))))...))))..)).(((((.....)))))..(((((((..........------------...)))))))......... ( -26.82)
>DroSec_CAF1 24854 97 + 1
UCUUCUGCUUGUGCUCCAGUGUUAUUGCGCUGAUUGCGCUUGUCGCCGGAAUGUUCGGUUAGGAGUCUCCACUCCCAC------------CCCAGAUUCCACCGCCUCC
......((..((((..((((((....))))))...))))..))....(((((.(..(((..(((((....))))).))------------)..).)))))......... ( -28.80)
>DroSim_CAF1 25384 97 + 1
UCUUCUGCUUGUGCUCCAGUGUUAUUGCGCUGAUUGCGCUUGUCGCCGGAAUGUUCGGUUAGGAGUCUCCACUCCCAC------------CCCAGAUUCCACCGCCUCC
......((..((((..((((((....))))))...))))..))....(((((.(..(((..(((((....))))).))------------)..).)))))......... ( -28.80)
>DroEre_CAF1 24419 109 + 1
UCUUCUGCUUGUGCUCCAGUGUUAUUGCGCUGAUUGCGCUUGUCGCCGGAAUGUUCGGUUAGGAGUCCCCACUCCCACUCCCACUUCCACUCCAGAUUCCACCGCCUCC
...((((...((((..((((((....))))))...))))........((((.((..((...(((((....)))))....)).))))))....))))............. ( -27.90)
>consensus
UCUUCUGCUUGUGCUCCAGUGUUAUUGCGCUGAUUGCGCUUGUCGCCGGAAUGUUCGGUUAGGAGUCUCCACUCCCAC____________CCCAGAUUCCACCGCCUCC
...((((...((((..((((((....))))))...)))).....((((((...))))))..(((((....))))).................))))............. (-25.27 = -24.90 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:24 2006