Locus 6603

Sequence ID 2L_DroMel_CAF1
Location 18,541,112 – 18,541,209
Length 97
Max. P 0.858529
window10542

overview

Window 2

Location 18,541,112 – 18,541,209
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 96.29
Mean single sequence MFE -26.20
Consensus MFE -24.58
Energy contribution -25.22
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.94
SVM decision value 0.82
SVM RNA-class probability 0.858529
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18541112 97 - 22407834
AAGUAUCUACAACACAGGAGAGUGGGAGACCUUGCAGAUGCUUAACAUGGAAAUUUAUGUCUGCACAGGGAAAUUCUUGGGGGCACAAAUCAUGGGG
((((((((.(((.((......))((....))))).))))))))..((((...((((.(((((...(((((....))))).))))).))))))))... ( -24.30)
>DroSec_CAF1 18454 96 - 1
AAGUAUAUACAACUCAGGAGAGUGGGAGACCUUGCAGAUGCUUAACAUGGAAAUUUAUGUCUGCACAGGGAAA-UCUUGGGGGCACAAAUCAUGGAG
((((((...((((((....))))((....)).))...))))))..((((...((((.(((((.((.(((....-))))).))))).))))))))... ( -23.50)
>DroSim_CAF1 18431 97 - 1
AAGUAUCUACAACUCAGGAGAGUGGGAGACCUUGCAGAUGCUUAACAUGGAAAUUUAUGUCUGCACAGGGAAAUUCUUGGGGGCACAAAUCAUGGGG
((((((((.((((((....))))((....)).)).))))))))..((((...((((.(((((...(((((....))))).))))).))))))))... ( -28.10)
>DroEre_CAF1 18275 97 - 1
AAGUAUCUACAACUCAGGAGAGUGGGAGACCUUGCAGAUGCCUAACAUGGAGAUUUAUGUCUGCACAGGGAAAUUCUUGGGGGCCCAAGUCAUGGGG
..((((((.((((((....))))((....)).)).))))))....(((((((((....)))).............(((((....))))))))))... ( -27.00)
>DroYak_CAF1 18206 97 - 1
AAGUAUCUACAACUCAGGAGAGUGGGAGACCUUGCAGAUGCUUAACAUGGAAAUUUAUGUCUGCACAGGGAAUUUCUUGGGGGCACAAAUCAUGGGG
((((((((.((((((....))))((....)).)).))))))))..((((...((((.(((((...(((((....))))).))))).))))))))... ( -28.10)
>consensus
AAGUAUCUACAACUCAGGAGAGUGGGAGACCUUGCAGAUGCUUAACAUGGAAAUUUAUGUCUGCACAGGGAAAUUCUUGGGGGCACAAAUCAUGGGG
((((((((.((((((....))))((....)).)).))))))))..((((...((((.(((((...(((((....))))).))))).))))))))... (-24.58 = -25.22 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:23 2006