| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,535,734 – 18,535,854 |
| Length | 120 |
| Max. P | 0.897778 |
| Location | 18,535,734 – 18,535,854 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -26.34 |
| Energy contribution | -26.57 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.897778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18535734 120 - 22407834 ACCCAAUUAAAAGUUUGGGAAUUUUCGCUUGUUUUCAUUAUCAACAAACGGAAAUUGUAGUUUCGUUAGUUUGCUUUCGGGUAAUUUAGCAAGCUGAUGCCAUGCUGCUUAUAAUAUUUU .(((((........)))))((((((((.(((((.........))))).))))))))(((((..((((((((((((............))))))))))))....)))))............ ( -34.20) >DroSec_CAF1 12963 120 - 1 ACCUAAUUAAAAGUUUGGGAAUUUUCGCCAGUUUUAAUUAUCAACAAACGGAAAUUCUGGUUGCAUUAGUUUGCUUUCGCGUAAUUUAGCAAGCUGAUGUCAUGCUGCUUAUAAUAUUUU .....((((.((((...((((((((((...(((.........)))...))))))))))(((.(((((((((((((............)))))))))))))...))))))).))))..... ( -29.10) >DroSim_CAF1 12956 120 - 1 ACCUAAUUAAAAGUUAGGGAAUUUUCGCCAGUUUUAAUUAUCAACAAACGGAAAUUCUGGUUGCAUUAGUUUGCUUUCGCGUAAUUUAGCAAGCUGAUGUCAUGCUGCUUAUAAUAUUUU .((((((.....))))))(((((((((...(((.........)))...))))))))).(((.(((((((((((((............)))))))))))))...))).............. ( -30.60) >consensus ACCUAAUUAAAAGUUUGGGAAUUUUCGCCAGUUUUAAUUAUCAACAAACGGAAAUUCUGGUUGCAUUAGUUUGCUUUCGCGUAAUUUAGCAAGCUGAUGUCAUGCUGCUUAUAAUAUUUU .....((((.((((...((((((((((...(((.........)))...))))))))))(((.(((((((((((((............)))))))))))))...))))))).))))..... (-26.34 = -26.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:20 2006