Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,961,500 – 1,961,595 |
Length | 95 |
Max. P | 0.823681 |
Location | 1,961,500 – 1,961,595 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.00 |
Mean single sequence MFE | -19.05 |
Consensus MFE | -10.40 |
Energy contribution | -11.59 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.10 |
Structure conservation index | 0.55 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1961500 95 - 22407834 UUCAACCUCCCACGUUGCUGCCCUUCAUAUUUUUGCAUACAAUUUUGCAUAUUUGCAGAUAAAUCAU---------------AGCAAACCGCAGCUGCUAACCAUUGGUU ...((((......((.(((((............((((........))))..(((((...........---------------.)))))..))))).))........)))) ( -17.74) >DroSec_CAF1 3950 80 - 1 UUCAACCUCCCACGUUGCUGCCCUUCAAAUUUUUGCAU-CUAUUUUGCAUAUUUGC-----------------------------AAACCGCAGCUGCUAACCAUUGGUA ....(((......((.(((((..(((((((...((((.-......)))).))))).-----------------------------))...))))).))........))). ( -16.84) >DroSim_CAF1 8118 80 - 1 UUCAACCUCCCACGUUGCUGCCCUUCAAAUUUUUGCAU-CUAUUUUGCAUAUUUGC-----------------------------AAACCGCAGCUGCUAACCAUUGGUA ....(((......((.(((((..(((((((...((((.-......)))).))))).-----------------------------))...))))).))........))). ( -16.84) >DroEre_CAF1 13140 110 - 1 GCCGACCUCCCGCGGUGCUGCCCUUCAUAUUUUUGCAUACUACUUUGCAUACUUGCAGAUAAUUUGUUGGGUUUUCAUCAGAAGCAAACCGCAGCUGCUAACCACUGGUC ...((((....((((((((((((..((.(((((((((................)))))).))).))..))))..((....)))))..)))))((.((.....)))))))) ( -24.79) >consensus UUCAACCUCCCACGUUGCUGCCCUUCAAAUUUUUGCAU_CUAUUUUGCAUAUUUGC_____________________________AAACCGCAGCUGCUAACCAUUGGUA ....(((......((.(((((....(((((...((((........)))).)))))..((....)).........................))))).))........))). (-10.40 = -11.59 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006