Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,525,033 – 18,525,139 |
Length | 106 |
Max. P | 0.672383 |
Location | 18,525,033 – 18,525,139 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -25.17 |
Energy contribution | -24.45 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.30 |
Mean z-score | -1.48 |
Structure conservation index | 0.75 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18525033 106 + 22407834 CAAAUCCU--GUCUCCUUCACAGAGGGUGGCAUCAGCGCCCGAUCUCCUGACGGCACGGCUGCCUCCUUCAGCAAGGCCAAUUUGGCUGCCCUGAACUUGGCCAACUC ........--............(((((.((((.(.(.(((.(.((....)))))).).).)))).))))).....((((((((..(.....)..)).))))))..... ( -32.50) >DroSim_CAF1 2270 106 + 1 CUAAUCCU--AUCUACUUCACAGAGGGUGGCAUCAGCGCCCGAUCUCCCGACGGCACGGCUGCCUCUUUCAGCAAGGCCAAUCUGGCUGCCCUGAACCUGGCCAACUC ........--..........(((.(((..((....(.(((((......))..))).).))..)))..(((((...((((.....))))...))))).)))........ ( -28.70) >DroEre_CAF1 2279 106 + 1 UAAAUCCC--AUCUUCUUUACAGAGGGUGGCAUCAGUGCCCGGUCCCCCGACGGUACGGCUGCCUCCUUCAGCAAGGCCAACUUGGAUGCCCUGAACCUGGCCAACUC ........--............(((((.((((.(.((((((((....)))..))))).).)))).))))).....(((((..(..(.....)..)...)))))..... ( -34.90) >DroWil_CAF1 2036 108 + 1 CACUUCUUUUUUGCCUUUCGUAGAGGGCGGAAUCAGUGCUCGGUCUCCCGAUGGCACAGCCGCCUCCUUCAGCAAAGCCAAUCUGGCUGCCUUGAACAUGGCAAACUC .........((((((.((((.((..(((((.....((((((((....))))..))))..)))))..)).).(((..(((.....))))))...)))...))))))... ( -36.90) >DroYak_CAF1 2311 106 + 1 CAACUUUC--AUCUUCUUCGCAGAGGGUGGCAUCAGUGCCCGAUCCCCUGACGGUACGGCUGCCUCCUUCAGCAAGGCCAAUUUGGCUGCCCUGAACCUGGCCAACUC ........--.........((.(((((.((((.(.(((((.(.((....)))))))).).)))).))))).))..(((((.((..(.....)..))..)))))..... ( -34.20) >DroMoj_CAF1 2054 105 + 1 CUAC-UAU--AUUUUCCUUGCAGAGGGCGGCAUUAGCGCUCGUUCACCCGACGGCACCGCUGCCUCCUUUAGCAAGGCCAAUCUGGCUGCCCUAAGUCUGGCCAACUC ....-...--.......((((.(((((.((((...(.((.((((.....)))))).)...)))).))))).))))(((((....((((......)))))))))..... ( -34.80) >consensus CAAAUCCU__AUCUUCUUCACAGAGGGUGGCAUCAGCGCCCGAUCUCCCGACGGCACGGCUGCCUCCUUCAGCAAGGCCAAUCUGGCUGCCCUGAACCUGGCCAACUC ......................(((((.((((.(.(.(((((......))..))).).).)))).))))).....(((((....((....))......)))))..... (-25.17 = -24.45 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:18 2006