Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,521,974 – 18,522,082 |
Length | 108 |
Max. P | 0.857593 |
Location | 18,521,974 – 18,522,082 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 96.45 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -28.83 |
Energy contribution | -29.07 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.93 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18521974 108 - 22407834 UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGGUCGGUUGCAUUGACAUUA .....(((((.(((.((((((((.((((.((........)).))))...)))))))((((.((.....)).))))...........).))))))))............ ( -30.60) >DroSec_CAF1 42376 108 - 1 UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAUUUUCUUUUGUGGUUGGUUGCAUUGACAUUA .....(((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........))))))).(((.....))).... ( -31.20) >DroSim_CAF1 43288 108 - 1 UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGGUUGGUUGCAUUGACAUUA .....(((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........))))))).(((.....))).... ( -31.20) >DroYak_CAF1 42295 104 - 1 UAUUAAGCCGCACUUUGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUUGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGG----UUGCAUUGACAUUA .....(((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........)))))----))............ ( -31.30) >consensus UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGGUUGGUUGCAUUGACAUUA ......((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........))))))................. (-28.83 = -29.07 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:17 2006