| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,517,595 – 18,517,708 |
| Length | 113 |
| Max. P | 0.735049 |
| Location | 18,517,595 – 18,517,708 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -14.66 |
| Energy contribution | -15.90 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.735049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18517595 113 - 22407834 -UAGCGCCUUGAAAUGACGGAAG----AUGCCAGUUGCUAUCAGGCAGGCAAGUGCCAAAAGCAAAAACCUCAAAAGGCUCUUUAAACUUCAUUUGAAGAGC--UAGACACAUUAACAAA -((((..(((.((((((..((((----(.(((...((((....))))(((....)))...................)))))))).....)))))).))).))--)).............. ( -30.10) >DroPse_CAF1 45556 119 - 1 CCUGCACCUUGAAAAGACGGAAGCCAGAGACAGGUUUCGGCUU-GCCAACAACUGUCAAAAAUAAUAUGCUGAAAAGGCUCUUUAGGCUUCAAAUGAAGAGGCACAGACACAUUAACAAA .(((..((((.........((((((...(((((.....((...-.)).....))))).....(((...(((.....)))...))))))))).......))))..)))............. ( -29.79) >DroSec_CAF1 38038 112 - 1 -UAGCGCCUUGAAAUGACGGAAG----AGGCCUGUUGCUCUCA-GCAGGCAAGUGCCAAAAGCAAAAACCUCAAAAGGCUCUUUAAACUUCAUUUGAAGAGC--UAGACACAUUAACAAA -((((..(((.((((((..((((----((((((((((....))-))))))...(((.....)))....(((....))))))))).....)))))).))).))--)).............. ( -33.60) >DroSim_CAF1 37006 112 - 1 -UAGCGCCUUGAAAUGACGGAAG----AGGCCUGUUGCUCUCA-CCAGGCAAGUGCCACAAGCAAAAACCUCAAAAGGCUCUUUAAACUUCAUUUGAAGAGC--UAGACACAUUAACAAA -((((..(((.((((((..((((----(((((((.((....))-.)))))...(((.....)))....(((....))))))))).....)))))).))).))--)).............. ( -29.40) >DroYak_CAF1 37928 111 - 1 -CGGCGCCUUGAAAUGACGGAAG----AGGCCAGAUGCGCUCA-GCAGGCAAGUGUCAAAAGCAA-AACCUCAAAAGGCUCUUUAAACUUCAUUUGAAGAGC--UGGCCACAUUAACAAA -.(((((.((((.....(....)----..(((...(((.....-)))))).....))))..))..-..........(((((((((((.....))))))))))--).)))........... ( -29.50) >consensus _UAGCGCCUUGAAAUGACGGAAG____AGGCCAGUUGCUCUCA_GCAGGCAAGUGCCAAAAGCAAAAACCUCAAAAGGCUCUUUAAACUUCAUUUGAAGAGC__UAGACACAUUAACAAA ...((((..........(....)......(((((...........)))))..)))).....................((((((((((.....)))))))))).................. (-14.66 = -15.90 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:07 2006