Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,517,100 – 18,517,198 |
Length | 98 |
Max. P | 0.584751 |
Location | 18,517,100 – 18,517,198 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.09 |
Mean single sequence MFE | -16.23 |
Consensus MFE | -8.32 |
Energy contribution | -9.32 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.51 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18517100 98 + 22407834 -UAUUUCUACAUACAUGACUCCAAAAAACGGGUU----ACCCCAAAUAAAAUAAAAGUAUAACGACCAAUAUGCAUAGCAGCUGGA---------------UC--AAGAAAAAAAUCUCA -..(((((.......(((.((((......(((..----..))).............(((((........)))))........))))---------------))--))))))......... ( -13.21) >DroPse_CAF1 44953 117 + 1 AUAUAUCUACAUACAAGUUUCCCA-AAACGGGUCCCCAACCCCGAAAAAAAUAAAAGUAAUUCAAGCCAUAUGCACAGCAGCUGGAGUGGAUAGAUACGUAUCU-GAAAAA-GUAUCUCG ...(((((((.(((..((((....-))))((((.....))))..............))).......(((..(((...)))..))).)))))))(((((......-......-)))))... ( -22.60) >DroSec_CAF1 37541 97 + 1 -CAUUUCUACAUACAUGACUCCAAAAAACGGGUU----AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAACAGCUGGA---------------UC--AAGAAA-AAAUCUGA -..(((((.......(((.((((.....((((..----..))))............(((((........)))))........))))---------------))--))))))-........ ( -16.11) >DroSim_CAF1 36507 97 + 1 -CAUUUCUACAUACAUGAGUCCAAAAAACGGGUU----AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAGCAGCUGGA---------------UC--AAGAAA-AAAUCUGA -..(((((.......(((.((((.....((((..----..))))............(((((........)))))........))))---------------))--))))))-........ ( -16.11) >DroYak_CAF1 37436 99 + 1 -CAUUUCUACAUACAUGACUCAAAAAAACGGGUU----AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAGCAGCUGGA---------------UCCGAAAAAA-AAAUCUAA -..((((.....................((((..----..))))...................(((((...(((...)))..))).---------------)).))))...-........ ( -13.10) >consensus _CAUUUCUACAUACAUGACUCCAAAAAACGGGUU____AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAGCAGCUGGA_______________UC__AAGAAA_AAAUCUCA ...................((((.....((((........))))............(((((........)))))........)))).................................. ( -8.32 = -9.32 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:06 2006