Locus 6591

Sequence ID 2L_DroMel_CAF1
Location 18,516,582 – 18,516,698
Length 116
Max. P 0.544148
window10523

overview

Window 3

Location 18,516,582 – 18,516,698
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.88
Mean single sequence MFE -23.27
Consensus MFE -12.16
Energy contribution -13.00
Covariance contribution 0.84
Combinations/Pair 1.25
Mean z-score -2.98
Structure conservation index 0.52
SVM decision value 0.02
SVM RNA-class probability 0.544148
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18516582 116 - 22407834
AAUAAAUAUGAUAAAUGACAGCCCAUCGAAAGACGGCUAAAACUUGCAAAUUAAAUUACA-AAAACACAUAAAAUAACGAAUUCUCGACUAA---GAGAAUUCGGUUUCGGUUUCAGAUA
........(((.....(((((((..((....)).))))......................-................(((((((((......---))))))))))))......))).... ( -24.10)
>DroPse_CAF1 44348 108 - 1
UAUAAAUAUGAUAAAUGACAGACAAUCGAAAGACGGCCAAAAGUUGCAAAUUAAAUUAAA-AACACACUGAGAAAA--G-AUAUAUGCCUAAGCUGAGAAUUUGGUUUCAAU--------
........(((..............((....)).(((((((.(((...............-)))...((.((...(--(-........))...)).))..))))))))))..-------- ( -11.26)
>DroSec_CAF1 37023 117 - 1
AAUAAAUAUGAUAAAUGACAGCCCAUCGAAAGACGGGCAAAACUUGCAAAUUAAAUUUUAAAAAACACCUAAAAUAACGAAUUCUCGACUAA---GAGAAUUCGGUUUCGGUUUCAGAUA
........(((.........((((.((....)).))))............................(((.(((....(((((((((......---))))))))).))).))).))).... ( -29.30)
>DroSim_CAF1 35991 116 - 1
AAUAAAUAUGAUAAAUGACAGCCCAUCGAAAGACGGGCAAAACUUGCAAAUUAAAUUUCA-AAAACACCUAAAAUAACGAAUUCUCGACUAA---GAGAAUUCGGUUUCGGUUUCAGAUA
........(((.........((((.((....)).))))......................-.....(((.(((....(((((((((......---))))))))).))).))).))).... ( -29.30)
>DroYak_CAF1 36919 116 - 1
AAUAAAUAUGAUAAAUGACUGCCUAUCGAAAGACGGCCACAACUUGCAAAUUAAAUUACA-AAAACACAUAAAAUAACGAAUUCUCGACUAA---GAGAAUUCGGUUUCGGUUUCAGAUA
..................(((...(((((((....((........)).............-................(((((((((......---))))))))).)))))))..)))... ( -22.40)
>consensus
AAUAAAUAUGAUAAAUGACAGCCCAUCGAAAGACGGCCAAAACUUGCAAAUUAAAUUACA_AAAACACAUAAAAUAACGAAUUCUCGACUAA___GAGAAUUCGGUUUCGGUUUCAGAUA
........(((.....(((.(.((.((....)).)).).......................................(((((((((.........))))))))))))......))).... (-12.16 = -13.00 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:05 2006