Locus 6590

Sequence ID 2L_DroMel_CAF1
Location 18,515,704 – 18,515,816
Length 112
Max. P 0.577368
window10522

overview

Window 2

Location 18,515,704 – 18,515,816
Length 112
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 95.86
Mean single sequence MFE -25.31
Consensus MFE -21.96
Energy contribution -22.09
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.87
SVM decision value 0.09
SVM RNA-class probability 0.577368
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18515704 112 + 22407834
UGUCGUAGAAUUCUUGCUAAAAGUUUUCCCAAGUGUUUUACAGCAUACAAACAUUUUU-UUUAACACUUUUUGACAUUUUUCUAUCGACUGUGGCGUCAAGGCUUGGCGCCCC
.(((((((((....(((.((((((......((((((((..........))))))))..-......)))))).).))...))))).))))...(((((((.....))))))).. ( -26.24)
>DroSec_CAF1 36127 113 + 1
UGUCGUAGAAUUCUUGCUAAAAGUUUUCUCGAGUGUUUUACAGCAUACAAACAUUUUUGUUUAACACUUUUUGACAUUUUUCUAUCGACUGCUGCGUCAAGGCUUGGCGCCCC
.(((((((((....(((.((((((......(.((((......)))).)(((((....)))))...)))))).).))...))))).))))....((((((.....))))))... ( -25.10)
>DroSim_CAF1 35085 113 + 1
UGUCGUAGAAUUCUUGCUAAAAGUUUUCUCGAGUGUUUUACAGCAUACAAACAUUUUUGUUUAACACUUUUUGACAUUUUUCUAUCGACUGCGGCGUCAAGGCUUGGCGCCCC
.(((((((((....(((.((((((......(.((((......)))).)(((((....)))))...)))))).).))...))))).))))...(((((((.....))))))).. ( -28.70)
>DroYak_CAF1 36036 110 + 1
UGUCGUAGAAUUCUUGCUAAAAGUUUUCUCGAGUGUUUUACAGCAUACAAACAUUUU---UUAACACUUUUUGACAUUUUUCUAUCGACUGCGACGUCAAGGCUUGGUGCCCC
.(((((((((....(((.((((((......((((((((..........)))))))).---.....)))))).).))...))))).))))...........(((.....))).. ( -21.20)
>consensus
UGUCGUAGAAUUCUUGCUAAAAGUUUUCUCGAGUGUUUUACAGCAUACAAACAUUUUU_UUUAACACUUUUUGACAUUUUUCUAUCGACUGCGGCGUCAAGGCUUGGCGCCCC
.(((((((((....(((.((((((......((((((((..........)))))))).........)))))).).))...))))).))))...(((((((.....))))))).. (-21.96 = -22.09 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:04 2006