Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,961,286 – 1,961,382 |
Length | 96 |
Max. P | 0.939949 |
Location | 1,961,286 – 1,961,382 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.87 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -12.01 |
Energy contribution | -12.40 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.24 |
Mean z-score | -2.35 |
Structure conservation index | 0.44 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1961286 96 - 22407834 -GAGUGGAAACGCUCAAAGGAUUUAGGCAGUAAUUUGCGCUAAUUUGGGUCCAG-CGG------------AAAAAUAUGGAAGAGAGGGAGG-------GCCC---UUUUCAAUGCAGAA -(((((....))))).......((((((((....)))).))))((((..((((.-...------------.......)))).(((((((...-------..))---)))))....)))). ( -28.00) >DroSec_CAF1 3736 96 - 1 -GAGUGGAAACGCUCAAAGGAUUUAGGCAGUAAUUUGCGCUAAUUUGGGUCCAG-CGG------------AAAAAUAUGGAAGAGAGGGAGG-------UUCC---UUUUCAAUACAGAA -(((((....))))).......((((((((....)))).))))((((..((((.-...------------.......)))).(((((((...-------..))---)))))....)))). ( -28.90) >DroSim_CAF1 7904 96 - 1 -GAGUGGAAACGCUCAAAGGAUUUAGGCAGUAAUUUGCGCUAAUUUGGGUCCAG-CGG------------AAAAAUAUGGAAGAGAGGGAGG-------UUCC---UUUUCAAUACAGAA -(((((....))))).......((((((((....)))).))))((((..((((.-...------------.......)))).(((((((...-------..))---)))))....)))). ( -28.90) >DroEre_CAF1 12928 94 - 1 AGAGUGGAAACGCUCAAAGGAUUUGGGCAGUAAUUUGUGCUGAUUUGGGUGCAG-CGG------------AUAGA---AGAUGGUAGAGA-------GUGCCC---CUCUCAGCACAGAA .(((((....)))))..................((((((((((...(((..(..-(..------------.((..---...))...)...-------)..)))---...)))))))))). ( -32.60) >DroYak_CAF1 10728 107 - 1 GCAGUGCAAACGCUCAAAGGAUUUGGCCCGUAAUUUGUGUUAAUUUGGGUGCAG-CGA------------AAAAAAAGAGAUGAAAGGGAGAUGGAAGUGGCCUUCUUCUCAAUACAGAA ...(((....(((((((.....)))(((((.((((......)))))))))..))-)).------------..................((((.(((((....)))))))))..))).... ( -19.90) >DroAna_CAF1 33785 105 - 1 -GAGUGGAAACGCUCAAAGGAUUUCGGCAGUAAUUUGUGCUAAUUUGGGUCCACACGGAUGUGGGUAUUGAAAAUCAUAGAA---AGAUAUA--------UCC---CAUACAAAGGAGUA -(((((....))))).....(((((((((........))))....((((((((((....))))))........(((......---.)))...--------.))---))......))))). ( -26.00) >consensus _GAGUGGAAACGCUCAAAGGAUUUAGGCAGUAAUUUGCGCUAAUUUGGGUCCAG_CGG____________AAAAAUAUAGAAGAGAGGGAGG_______GUCC___UUUUCAAUACAGAA .(((((....)))))...((((((((((((....)))).)))).....)))).................................................................... (-12.01 = -12.40 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:12 2006