Locus 6587

Sequence ID 2L_DroMel_CAF1
Location 18,513,673 – 18,513,775
Length 102
Max. P 0.961478
window10514

overview

Window 4

Location 18,513,673 – 18,513,775
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.84
Mean single sequence MFE -28.00
Consensus MFE -27.78
Energy contribution -27.62
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.99
SVM decision value 1.53
SVM RNA-class probability 0.961478
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18513673 102 + 22407834
------------------GUGGCCAAGAUAGGCUCGUCGCUCUUAUAUUCGGGUCAAUGCUGUGCUCUGCAUUGCCAACGUUAUGCUAAUUACCGAAAGGAUACAAAUCAUAGCAUACAU
------------------.(((((..(((((((.....)))....))))..)))))((((((((....((((.((....)).))))......((....))........)))))))).... ( -27.70)
>DroPse_CAF1 40811 120 + 1
CGCUUCGUCGCUUCGUUUUUGGCCAAAAUAGGCUCGUCGCUUUGCUAUUCGGGUCAAUGCUGUGCUCUGCAUUGCCAACGUUAUGCUAAUUACCGAAAGGAUACAAAUCAUAGCAUACAU
.((......))........(((((..(((((((.....))....)))))..)))))((((((((....((((.((....)).))))......((....))........)))))))).... ( -29.20)
>DroSec_CAF1 34107 102 + 1
------------------GUGGCCAAGAUAGGCUCGUCGCUCUUAUAUUCGGGUCAAUGCUGUGCUCUGCAUUGCCAACGUUAUGCUAAUUACCGAAAGGAUACAAAUCAUAGCAUACAU
------------------.(((((..(((((((.....)))....))))..)))))((((((((....((((.((....)).))))......((....))........)))))))).... ( -27.70)
>DroSim_CAF1 32655 102 + 1
------------------GUGGCCAAGAUAGGCUCGUCGCUCUUAUAUUCGGGUCAAUGCUGUGCUCUGCAUUGCCAACGUUAUGCUAAUUACCGAAAGGAUACAAAUCAUAGCAUACAU
------------------.(((((..(((((((.....)))....))))..)))))((((((((....((((.((....)).))))......((....))........)))))))).... ( -27.70)
>DroYak_CAF1 34085 102 + 1
------------------GUGGCCAAGAUAGGCUCCUCGCUCUUAUAUUCGGGUCAAUGCUGUGCUCUGCAUUGCCAACGUUAUGCUAAUUACCGAAAGGAUUCAAAUCAUAGCAUACAU
------------------.(((((..(((((((.....)))....))))..)))))((((((((....((((.((....)).))))......((....))........)))))))).... ( -27.70)
>consensus
__________________GUGGCCAAGAUAGGCUCGUCGCUCUUAUAUUCGGGUCAAUGCUGUGCUCUGCAUUGCCAACGUUAUGCUAAUUACCGAAAGGAUACAAAUCAUAGCAUACAU
...................(((((..(((((((.....)))....))))..)))))((((((((....((((.((....)).))))......((....))........)))))))).... (-27.78 = -27.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:57 2006