Locus 6581

Sequence ID 2L_DroMel_CAF1
Location 18,506,393 – 18,506,489
Length 96
Max. P 0.960171
window10496

overview

Window 6

Location 18,506,393 – 18,506,489
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.40
Mean single sequence MFE -18.93
Consensus MFE -9.70
Energy contribution -10.66
Covariance contribution 0.96
Combinations/Pair 1.32
Mean z-score -2.05
Structure conservation index 0.51
SVM decision value 1.51
SVM RNA-class probability 0.960171
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18506393 96 + 22407834
-----------------AAAACUUAGUUACAUAGCUUGCAUUUCAGUUGGAAUUAC-AUACAACAACAAAAUGCUCUCAGCUGUAGCUAAUAUAAGGAAAU------AGAAUUUCGCUUU
-----------------.....(((((((((..(((.((((((..((((.......-......)))).))))))....))))))))))))...((((((((------...))))).))). ( -19.82)
>DroPse_CAF1 31357 116 + 1
UAGAAAUCCAUAAAAAGAAAACCUACUCGCACA---UAUAUUUUCUUUACAAUAGCAGUAAAAAAACAAU-CGUCAGCAAUAGCAACUAAUGGAAGCAACUGCAACAACAAUUCAGCUAU
..(((........((((((((..((........---))..))))))))......(((((...........-.....((....))......((....)))))))........)))...... ( -13.10)
>DroSec_CAF1 26802 96 + 1
-----------------AAAACUUAGUUACAUAGCUUGCAUUUCAGUUGGAAUUAC-GUACAACAACAAAAUGCUCUGAGCUGUAGCUAAUAUAAGGAAAU------AGAAUUUCGCUAU
-----------------.....(((((((((..((((((((((..((((.......-......)))).))))))...)))))))))))))....(((((((------...))))).)).. ( -20.52)
>DroSim_CAF1 25993 96 + 1
-----------------AAAACUUAGUUACAUAGCUUGCAUUUCAGUUGGAAUUAC-GUACAACAACAAAAUGCUCUGAGCUGCAGCUAAUAUAAGGAAAU------AGAAUUUCGCUAU
-----------------.....((((((...((((((((((((..((((.......-......)))).))))))...)))))).))))))....(((((((------...))))).)).. ( -17.22)
>DroYak_CAF1 26893 91 + 1
-----------------AAAACUUAGUUACACGGCUUGCAUUUCAGUUGGAA------UAUAACAACAAAAUGCUAGCAGCUGUAGCUAAUAUAAGGAAAU------AGAAUUUCGCAAC
-----------------.....(((((((((..(((.((((((..((((...------.....)))).)))))).)))...)))))))))......(((((------...)))))..... ( -24.00)
>consensus
_________________AAAACUUAGUUACAUAGCUUGCAUUUCAGUUGGAAUUAC_GUACAACAACAAAAUGCUCUCAGCUGUAGCUAAUAUAAGGAAAU______AGAAUUUCGCUAU
......................((((((((..((((.((((((..((((...........))))....))))))....)))))))))))).............................. ( -9.70 = -10.66 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:40 2006