Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,959,748 – 1,959,859 |
Length | 111 |
Max. P | 0.638193 |
Location | 1,959,748 – 1,959,859 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.89 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -8.72 |
Energy contribution | -10.64 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.05 |
Mean z-score | -1.80 |
Structure conservation index | 0.36 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1959748 111 - 22407834 CCACAGCCACCCCCUCAUUCCUUCAUCCCCCCCCUCUAGCAGAUUCCUCUUUUU--UAGAGAGAAUGCUUCUGAGCUUCAUGAUGCUGGUGGUGAUGAGUUGGCAAAACCCGC .....((((.(.(.(((((((..((((......(((.((((..(((((((....--.)))).)))))))...)))......))))..)).))))).).).))))......... ( -29.10) >DroSec_CAF1 2259 94 - 1 CCACAGCCACCCCCUCAUUCCAUCAUCACCCC-----AGCAGAUUCCUCUUUUU--UAGAGAGAAUGCUUCUGAGCUUCAUG------------AUGAGUUGGCAAAACCCGC .....((((....((((((......(((....-----((((..(((((((....--.)))).)))))))..))).......)------------))))).))))......... ( -20.62) >DroSim_CAF1 6051 94 - 1 CCACAGACACCCCCUCAUUCCAUCAUCACCCC-----AGCAGAUUUCUCUUUUU--UAGAGAGAAUGCUUCUGAGCUUCAUG------------AUGAGUUGGCAAAACCCGC .........((..((((((......(((....-----((((..(((((((....--.))))))).))))..))).......)------------)))))..)).......... ( -19.22) >DroEre_CAF1 11522 97 - 1 CCACAGCCACCCCCUCAUUCCAUCA-------------GCAGAUUCCUCUUUU---UAGAGAAAACGCUUCUGAGGUUCAUGAUGCUGCUGGUGAUGAGUUGGCGAAACCCGC .....((((....(((((..(((((-------------((((..((....(((---(((((.......)))))))).....))..)))))))))))))).))))......... ( -29.00) >DroYak_CAF1 9300 99 - 1 CCACAGCCACCCCCUCAUCCACUCAUACACUCAUACACGCAGAUUCCACUUUUUUAUAGAGAGAAUGCUUCCGAGGUUCAUGAGGCUGGUGGUGAUGAG-------------- .((..((((((.((((((...(((.....(((......).))((((..((((.....)))).))))......)))....))))))..))))))..))..-------------- ( -24.30) >consensus CCACAGCCACCCCCUCAUUCCAUCAUCACCCC_____AGCAGAUUCCUCUUUUU__UAGAGAGAAUGCUUCUGAGCUUCAUGA_GCUG_UGGUGAUGAGUUGGCAAAACCCGC .....((((....((((((...................(((.....((((((.....))))))..)))....(.....)..............)))))).))))......... ( -8.72 = -10.64 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006