Locus 658

Sequence ID 2L_DroMel_CAF1
Location 1,959,748 – 1,959,859
Length 111
Max. P 0.638193
window1078

overview

Window 8

Location 1,959,748 – 1,959,859
Length 111
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 74.89
Mean single sequence MFE -24.45
Consensus MFE -8.72
Energy contribution -10.64
Covariance contribution 1.92
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.36
SVM decision value 0.22
SVM RNA-class probability 0.638193
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1959748 111 - 22407834
CCACAGCCACCCCCUCAUUCCUUCAUCCCCCCCCUCUAGCAGAUUCCUCUUUUU--UAGAGAGAAUGCUUCUGAGCUUCAUGAUGCUGGUGGUGAUGAGUUGGCAAAACCCGC
.....((((.(.(.(((((((..((((......(((.((((..(((((((....--.)))).)))))))...)))......))))..)).))))).).).))))......... ( -29.10)
>DroSec_CAF1 2259 94 - 1
CCACAGCCACCCCCUCAUUCCAUCAUCACCCC-----AGCAGAUUCCUCUUUUU--UAGAGAGAAUGCUUCUGAGCUUCAUG------------AUGAGUUGGCAAAACCCGC
.....((((....((((((......(((....-----((((..(((((((....--.)))).)))))))..))).......)------------))))).))))......... ( -20.62)
>DroSim_CAF1 6051 94 - 1
CCACAGACACCCCCUCAUUCCAUCAUCACCCC-----AGCAGAUUUCUCUUUUU--UAGAGAGAAUGCUUCUGAGCUUCAUG------------AUGAGUUGGCAAAACCCGC
.........((..((((((......(((....-----((((..(((((((....--.))))))).))))..))).......)------------)))))..)).......... ( -19.22)
>DroEre_CAF1 11522 97 - 1
CCACAGCCACCCCCUCAUUCCAUCA-------------GCAGAUUCCUCUUUU---UAGAGAAAACGCUUCUGAGGUUCAUGAUGCUGCUGGUGAUGAGUUGGCGAAACCCGC
.....((((....(((((..(((((-------------((((..((....(((---(((((.......)))))))).....))..)))))))))))))).))))......... ( -29.00)
>DroYak_CAF1 9300 99 - 1
CCACAGCCACCCCCUCAUCCACUCAUACACUCAUACACGCAGAUUCCACUUUUUUAUAGAGAGAAUGCUUCCGAGGUUCAUGAGGCUGGUGGUGAUGAG--------------
.((..((((((.((((((...(((.....(((......).))((((..((((.....)))).))))......)))....))))))..))))))..))..-------------- ( -24.30)
>consensus
CCACAGCCACCCCCUCAUUCCAUCAUCACCCC_____AGCAGAUUCCUCUUUUU__UAGAGAGAAUGCUUCUGAGCUUCAUGA_GCUG_UGGUGAUGAGUUGGCAAAACCCGC
.....((((....((((((...................(((.....((((((.....))))))..)))....(.....)..............)))))).))))......... ( -8.72 = -10.64 +   1.92) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006