Locus 6579

Sequence ID 2L_DroMel_CAF1
Location 18,504,117 – 18,504,208
Length 91
Max. P 0.574698
window10494

overview

Window 4

Location 18,504,117 – 18,504,208
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -16.98
Consensus MFE -15.57
Energy contribution -15.20
Covariance contribution -0.37
Combinations/Pair 1.10
Mean z-score -1.46
Structure conservation index 0.92
SVM decision value 0.08
SVM RNA-class probability 0.574698
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18504117 91 - 22407834
AAAGUCGUCUAAAAAAAAGGGCAUACAACACAAGAGGCCGAAACAUUUCAUUGAAAAUUGGCACGCUUCAUUGAAGCGAGUCACAAAAAGC
......((((........))))...........((.(((((..((......))....))))).((((((...))))))..))......... ( -15.50)
>DroSec_CAF1 24655 89 - 1
AAAGUCGUCUAAA--AAAGGGCGCACAACACAAGAGGCCGAAACAUUUCAUUGAAAAUUGGCACGCUUCAUUGAAGCGAGUCACAAAAAGC
...(((((((...--...))))).)).......((.(((((..((......))....))))).((((((...))))))..))......... ( -18.80)
>DroSim_CAF1 23867 89 - 1
AAAGUCGUCUAAA--AAAGGGCACACAACACAAGAGGCCGAAACAUAUCAUUGAAAAUUGGCACGCUUCAUUGAAGCGAGUCACAAAAAGC
...((.((((...--...)))))).........((.(((((..((......))....))))).((((((...))))))..))......... ( -16.10)
>DroYak_CAF1 24745 89 - 1
GAAGUCGUCUAAA--AAAGGGCACACAACACAAGAUGCCGAAACAUUUCAUUGAAAAUUGGCACGCUUCAAUGAAGCGAGUCACAAAAAAC
...((.((((...--...)))))).........((((((((..((......))....))))).((((((...)))))).)))......... ( -17.50)
>consensus
AAAGUCGUCUAAA__AAAGGGCACACAACACAAGAGGCCGAAACAUUUCAUUGAAAAUUGGCACGCUUCAUUGAAGCGAGUCACAAAAAGC
...((.((((........)))))).........((.(((((..((......))....))))).((((((...))))))..))......... (-15.57 = -15.20 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:38 2006