Locus 6578

Sequence ID 2L_DroMel_CAF1
Location 18,503,926 – 18,504,018
Length 92
Max. P 0.587714
window10493

overview

Window 3

Location 18,503,926 – 18,504,018
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -25.72
Consensus MFE -19.20
Energy contribution -20.52
Covariance contribution 1.32
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.75
SVM decision value 0.11
SVM RNA-class probability 0.587714
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18503926 92 - 22407834
CCAGGCGGAGUUUUGAUGGCAACUCAAGACAUGGCCAAGAACGGCACUUUUGAUGCGAGCGAUCGCCGGGAGAGGCCACCA-AACCAA---AAAGA
...(((.(.(((((((.(....)))))))).).)))......(((.(((((...((((....))))...))))))))....-......---..... ( -30.10)
>DroPse_CAF1 27989 94 - 1
CCGGGCGUUGU-UUGAUGGCAACUCAAGACAUGGCCAAGAACGGCACUUUUGAUGCAAACGAUCGGCAAGACC-ACCACCAAAAACAAAACAAAAA
...(.((((((-(((..(....)((((((....(((......)))..))))))..))))))).)).)......-...................... ( -18.30)
>DroSec_CAF1 24464 92 - 1
CCAGGCGGAGUUUUGAUGGCAACUCAAGACAUGGCCAAGAACGGCACUUUUGAUGCAAGCGAUCGCCAGGAGAGGCCACCA-AGCCAA---AAAGA
((.(((((.(((((((.(....))))))))...(((......))).................))))).))...(((.....-.)))..---..... ( -27.60)
>DroSim_CAF1 23675 92 - 1
CCAGGCGGAGUUUUGAUGGCAACUCAAGACAUGGCCAAGAACGGCACUUUUGAUGCAAGCGAUCGCCAGGAGAGCCCACCA-AACCAA---AAAGA
...(((.(.(((((((.(....)))))))).).)))......(((.((((((..((........)))))))).))).....-......---..... ( -26.10)
>DroYak_CAF1 24559 91 - 1
CCAGGCGCAGUUUUGAUGGCAACUCAAGACAUGGCCAAGAACGGCACUUUUGAUGCAAACGAUCGCCA-GAGAGGCCACCA-AACCAA---AAAGA
...(((.(((((((((.(....)))))))).)))))......(((.(((((...((........))..-))))))))....-......---..... ( -26.50)
>consensus
CCAGGCGGAGUUUUGAUGGCAACUCAAGACAUGGCCAAGAACGGCACUUUUGAUGCAAGCGAUCGCCAGGAGAGGCCACCA_AACCAA___AAAGA
...(((.(.(((((((.(....)))))))).).)))......(((.((((((..((........))))))))..)))................... (-19.20 = -20.52 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:37 2006