| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,501,054 – 18,501,151 |
| Length | 97 |
| Max. P | 0.911485 |
| Location | 18,501,054 – 18,501,151 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.42 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -16.38 |
| Energy contribution | -17.13 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18501054 97 + 22407834 ---AUAAGUC-------CAAUUAUGACAGUGAUUUUUCUUUCGGUGCACCCACACAUGUGGCUUCAAUUUGGCUGGGCCAUCGUCUUUGCCUUCGACUCUGCCACAU ---.......-------......((.((.(((........))).)))).......(((((((........(((.((((....))))..))).........))))))) ( -21.73) >DroSec_CAF1 21540 100 + 1 ACUAUAGGUC-------CAAUUAUGACAGUCAUUUUUCUUUCUGUGCACCCACACAUGUGGCUUCAAUUUGGCUGGGCCAUAGUCUUUGCCUUCGACUCUGCCACAU ..((((((..-------.((..(((.....)))..))...)))))).........(((((((........(((.((((....))))..))).........))))))) ( -22.23) >DroSim_CAF1 20771 88 + 1 ACUAUAAGUC-------CAAUUAUGACAGUGAUUUUUCUUUCGGUGCACCCACACAUGUGGCUUCAAUUUGACUGGGACAUCGCCUU------------UGCCACAU .......(((-------.......))).(((((.(..(..(((.((...((((....))))...))...)))..)..).)))))...------------........ ( -15.40) >DroYak_CAF1 21600 105 + 1 UUUCCAGACUCCUUUUGGAUUUUGGACAG--AUUUUUUUUUCUGUGCACCCACACAUGUGGCUUCAAUUUGGCUGGGCAAUCGCCUUUGCCUUUGACUCUGCCACAU ...(((((.(((....))).)))))((((--(........)))))..........(((((((.((((...(((.((((....))))..))).))))....))))))) ( -37.30) >consensus ACUAUAAGUC_______CAAUUAUGACAGUGAUUUUUCUUUCGGUGCACCCACACAUGUGGCUUCAAUUUGGCUGGGCCAUCGCCUUUGCCUUCGACUCUGCCACAU ...........................................(((......)))(((((((........(((.((((....))))..))).........))))))) (-16.38 = -17.13 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:37 2006