Locus 6576

Sequence ID 2L_DroMel_CAF1
Location 18,500,072 – 18,500,165
Length 93
Max. P 0.500000
window10491

overview

Window 1

Location 18,500,072 – 18,500,165
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 93.53
Mean single sequence MFE -34.56
Consensus MFE -28.40
Energy contribution -28.80
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18500072 93 - 22407834
GCAUCCCUUGGCUGCGCGAGCGGGCAGCUCAUCACUGCUAUCUAGAUAGAGAUACAUAUUGGGC-CGCGUUCGCGUU------UGCGUUCGCGCGUUCGC
(((.((...)).)))(((((((....(((((....((.(((((......)))))))...)))))-((((..(((...------.)))..))))))))))) ( -34.60)
>DroSec_CAF1 20528 93 - 1
GCAUCCCUUGGCUGCGCGAGCGUGCAGCUCAUCACUGCUAUCUAGAUAGAGAUACAUAUUGGGC-CGCGUUCGCGUU------UGCGUUCGCGCGUUCGC
(((.((...)).)))((((((((((.(((((....((.(((((......)))))))...)))))-...(..(((...------.)))..))))))))))) ( -35.50)
>DroSim_CAF1 19827 93 - 1
GCAUCCCUUGGCUGCGCGAGCGUGCAGCUCAUCACUGCUAUCUAGAUAGAGAUACAUAUUGGGC-CGCGUUCGCGUU------UGCGUUCGCGCGUUCGC
(((.((...)).)))((((((((((.(((((....((.(((((......)))))))...)))))-...(..(((...------.)))..))))))))))) ( -35.50)
>DroEre_CAF1 21108 98 - 1
GCAUCCCUUGCCUG--CGAGCGGCCAGCUCAUCACUGCUAUCUAGAUAGAGAUACAUUUUGGGCCCGCGUUCGCGUUUGCGUUUGCGUUCGCGCGUUCGC
(((.....)))..(--((((((((((((........)))((((......))))........))))((((..((((........))))..)))).)))))) ( -34.40)
>DroYak_CAF1 20653 92 - 1
GCAUCCCUUGCCUG--CGAGCGGGCAGCUCAUCACUGCUAUCUAGAUAGAGAUACAUAUUGGGCCCGCGUUCGCGUU------UGCGUUCGCGCGUUCGC
(((.....)))..(--((((((((((((........)))((((......)))).........))))(((..(((...------.)))..)))..)))))) ( -32.80)
>consensus
GCAUCCCUUGGCUGCGCGAGCGGGCAGCUCAUCACUGCUAUCUAGAUAGAGAUACAUAUUGGGC_CGCGUUCGCGUU______UGCGUUCGCGCGUUCGC
...............(((((((....(((((....((.(((((......)))))))...))))).((((..((((........))))..))))))))))) (-28.40 = -28.80 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:36 2006