Locus 6575

Sequence ID 2L_DroMel_CAF1
Location 18,497,007 – 18,497,115
Length 108
Max. P 0.528494
window10490

overview

Window 0

Location 18,497,007 – 18,497,115
Length 108
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 91.26
Mean single sequence MFE -37.12
Consensus MFE -33.08
Energy contribution -33.08
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -1.21
Structure conservation index 0.89
SVM decision value -0.01
SVM RNA-class probability 0.528494
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18497007 108 - 22407834
-CUGCAUGACUUCUGUCAACGAAAUGAUAUGCAGCAUCUGUCUAUGUGGCCAGCGGGCCAGGACGUGAUGCUGUGCCGCUGUUAGAGAGGAAACCUCAAUGUUCCGAUG
-..((.((((....))))............(((((((((((((...(((((....)))))))))).))))))))...)).....(((.(....))))............ ( -37.60)
>DroPse_CAF1 19807 108 - 1
AACGCAUGAGUUCUGUCAACGAAAUGACAUGCAGCAUCUGUCUAUGUAGCCAUAGGCCCAGGACGUGAUGCUGUGUCGCAGUAAGAGUCGAUGCCUCC-UCAGCCGCCA
...((.((((...(((((......)))))....(((((.(((((((....)))))))....(((....(((((.....)))))...))))))))...)-)))))..... ( -31.60)
>DroSec_CAF1 17499 108 - 1
-CUGCAUGACUUCUGUCAACGAAAUGACAUGCAGCAUCUGUCUAUGUGGCCAGCGGGCCAGGACGUGAUGCUGUGCCGCUGUUAGAGAGGAAACCUCGAUGUUCCGAUG
-.....((((....)))).((....((((((((((((((((((...(((((....)))))))))).))))))))..........(((.(....)))).))))).))... ( -38.30)
>DroSim_CAF1 16793 108 - 1
-CUGCAUGACUUCUGUCAACGAAAUGACAUGCAGCAUCUGUCUAUGUGGCCAGCGGGCCGGGACGUGAUGCUGUGCCGCUGUUAGAGAGGAAACCUCGAUGUUCCGAUG
-.....((((....)))).((....((((((((((((((((((...(((((....)))))))))).))))))))..........(((.(....)))).))))).))... ( -37.60)
>DroEre_CAF1 18003 108 - 1
-CUGUAUGACUUCUGUCAACGAAAUGACAUGCAGCAUCUGUCUAUGUGGCCAGCGGGCCAGGACGUGAUGCUGUGCCGCUGCUAGAGAGGAAACCUCGAUGUUCCGAUG
-.(((.((((....))))))).........(((((((((((((...(((((....)))))))))).))))))))..((..((..(((.(....))))...))..))... ( -39.00)
>DroYak_CAF1 17518 108 - 1
-CUGUAUGACUUCUGUCAACGAAAUGACAUGCAGCAUCUGUCUAUGUGGCCAGCGGGCCAGGACGUGAUGCUGUGCCGCUGUUAGAGAGGAAACCUCGAUGUUCCGAUG
-.(((.((((....)))))))....((((((((((((((((((...(((((....)))))))))).))))))))..........(((.(....)))).)))))...... ( -38.60)
>consensus
_CUGCAUGACUUCUGUCAACGAAAUGACAUGCAGCAUCUGUCUAUGUGGCCAGCGGGCCAGGACGUGAUGCUGUGCCGCUGUUAGAGAGGAAACCUCGAUGUUCCGAUG
...((........(((((......))))).(((((((((((((...(((((....)))))))))).))))))))...)).....(((.(....))))............ (-33.08 = -33.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:35 2006