Locus 6573

Sequence ID 2L_DroMel_CAF1
Location 18,493,269 – 18,493,361
Length 92
Max. P 0.539364
window10487

overview

Window 7

Location 18,493,269 – 18,493,361
Length 92
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -23.99
Consensus MFE -7.98
Energy contribution -8.94
Covariance contribution 0.96
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.33
SVM decision value 0.01
SVM RNA-class probability 0.539364
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18493269 92 - 22407834
UUUCAUGCCCCCAUUCUAUAUCCGCAACAGCGGAGUUUUUGGAGGGUAUUCAAAUGUGCGGUGACGUAUUCCGCGU-------CCAUAUUCCGUGUUAU
....(((((((((.......(((((....))))).....))).))))))......(..(((.(((((.....))))-------)......)))..)... ( -29.30)
>DroSec_CAF1 13467 92 - 1
UUUUAAGUCCCCAUUCUGUUUUCGGAACAGUGGACUCUCUGAAGAGUAUUCAAAUGUGCGCUGAAGUAUUCCGCGU-------AAAUAUUCCGUGUUAU
.....((((((..(((((....)))))..).))))).......(((((((......(((((.((.....)).))))-------))))))))........ ( -19.70)
>DroSim_CAF1 12939 92 - 1
UUUUAAGCACCCAUUCUAUAAGCGCAACAAUACUCUUCUUGAAGGGUAUUCAAAUGUGCGGUGACGUAUUCCGCUU-------CCAUAUUCCGUGUUAU
.....(((((.........(((((....(((((((((....))))))))).....(((((....)))))..)))))-------.........))))).. ( -23.47)
>DroEre_CAF1 14204 99 - 1
UUUUAAGCCUCCAUUAUAUUAUCGCAACAGUGGACUUUUUAAAGAGUAUUCAAAUGUUCGGUGACGUAUGGAAUAUGGACAUGGCAUAUUCCGUGUUAU
.........(((((.(..((((((.((((....(((((....))))).......))))))))))..)))))).....(((((((......))))))).. ( -23.10)
>DroYak_CAF1 13703 92 - 1
UUUUAAGCCCACAAUGUAUUAUCGCAACAGUGGGUUUUGUAAAGAGUAUUCAAAUGUGCGGUGACGUAUUCCAUGU-------CCAUACUCCGUGUUAU
....((((((((..(((......)))...))))))))......((((((.((...(((((....)))))....)).-------..))))))........ ( -24.40)
>consensus
UUUUAAGCCCCCAUUCUAUUAUCGCAACAGUGGACUUUUUGAAGAGUAUUCAAAUGUGCGGUGACGUAUUCCGCGU_______CCAUAUUCCGUGUUAU
.........................((((.((((.....((((.....))))...(((((....)))))....................)))))))).. ( -7.98 =  -8.94 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:32 2006