Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,492,309 – 18,492,442 |
Length | 133 |
Max. P | 0.835152 |
Location | 18,492,309 – 18,492,423 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 94.65 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -26.24 |
Energy contribution | -26.92 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.09 |
Mean z-score | -1.73 |
Structure conservation index | 0.81 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18492309 114 - 22407834 ACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGUGCACUGGUCAGUGUAUCUGUUUCCAUCAGUUGCAAAUGUAUC ....(((((((.((.(((.(.((((((((((.(((((((((...))))))))).(((..((((........))))..)))..)))).)))))).).))).)))))))))..... ( -32.80) >DroSec_CAF1 12519 114 - 1 ACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGGAACAUUAUGAGCACUGGUCAGUGUAUCUGUUUCCAUCAGCUGCAACUGUAUC ...((((((....))))))..........((((((((((((...)))))).((((((..(((((.((...(((((((....))))).)).)))))))..))))))))))))... ( -35.80) >DroSim_CAF1 11989 114 - 1 ACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGCACUGGCCAGUGUAUCUGUUUCCAUCAGCUGCAACUGUAUC ..........((((((.((((((((((((((....((((((...))))))(((.((((............))))....))).)))).)))))..........))))))))))). ( -32.30) >DroEre_CAF1 13259 114 - 1 ACAAAUUUGUAUACGGAUUGCAAUAGAAGGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGCACUGGUCAGUGUAUCUUAUUCCAUCAGCUGCAACUGUGUA .........(((((((.(((((....(((((.(((((((((...))))))))).)).)))((......(((((((((....))))...))))).......)))))))))))))) ( -32.52) >DroYak_CAF1 12771 113 - 1 ACAAAUUUGUAUACGGAUUGCAAUGGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGCACUGGUCAGUGUAUCUAUUUCCAUCAGCUG-AACUUAGUC ...((((((....))))))((.((((((.((.(((((((((...))))))))).))................(((((....)))))......))))))..))..-......... ( -27.60) >consensus ACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGCACUGGUCAGUGUAUCUGUUUCCAUCAGCUGCAACUGUAUC ..........((((((.((((((((((..((.(((((((((...))))))))).))................(((((....))))).)))))..........))))))))))). (-26.24 = -26.92 + 0.68)
Location | 18,492,349 – 18,492,442 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 98.28 |
Mean single sequence MFE | -25.04 |
Consensus MFE | -22.04 |
Energy contribution | -22.08 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.45 |
Structure conservation index | 0.88 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18492349 93 - 22407834 AAACGAUCCACCGAUCUGGACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGUGC ........(((.((((((.(((....)))...))))))(((..(((..((.(((((((((...))))))))).))))))))........))). ( -24.40) >DroSec_CAF1 12559 93 - 1 AAACGAUCCACCGAUCUGGACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGGAACAUUAUGAGC ....(.((((.(((((((.(((....)))...))))))).........((.(((((((((...))))))))).))...)))).)......... ( -26.00) >DroSim_CAF1 12029 93 - 1 AAACGAUCCACCGAUCUGGACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGC ............((((((.(((....)))...))))))(((..(((..((.(((((((((...))))))))).))))))))............ ( -23.20) >DroEre_CAF1 13299 93 - 1 AAACGAUCCACCGAUCUGGACAAAUUUGUAUACGGAUUGCAAUAGAAGGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGC ............((((((.(((....)))...))))))((((.....(((.(((((((((...))))))))).))).))))............ ( -23.40) >DroYak_CAF1 12810 93 - 1 AAACGAUCCACCGAUCUGGACAAAUUUGUAUACGGAUUGCAAUGGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGC ...((.((((.(((((((.(((....)))...)))))))...)))).))..(((((((((...))))))))).((((............)))) ( -28.20) >consensus AAACGAUCCACCGAUCUGGACAAAUUUGUAUACGGAUUGCAAUAGAACGCGGUUGCCAAUCAAAUUGGCGGCAGCUCUUGCAACAUUAUGAGC ............((((((.(((....)))...))))))(((..(((..((.(((((((((...))))))))).))))))))............ (-22.04 = -22.08 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:30 2006