| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,483,058 – 18,483,149 |
| Length | 91 |
| Max. P | 0.681163 |
| Location | 18,483,058 – 18,483,149 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 85.40 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -21.17 |
| Energy contribution | -21.12 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18483058 91 + 22407834 AAUCAGGCCAUGGUCGUAACGCCGGUUUCCGAGAAACCCUCAGCAGCGACGAUUCCCGUCGCUUUCUAAGGCCAUACAAGUACUUGAAAA-C .....((((.(((.......((.((((((...))))))....))(((((((.....)))))))..))).))))...(((....)))....-. ( -27.00) >DroSec_CAF1 3284 91 + 1 AACCAGGCCAUGGUCGUAACGCCGGUUUCCGAGAAACCAUCAGCAGCGACGAUUCCCGUCGCUUUCUAAGGCCAUACAAGUACUUGAAAA-U .....((((..(((......)))((((((...))))))......(((((((.....)))))))......))))...(((....)))....-. ( -27.90) >DroSim_CAF1 2746 91 + 1 AAUCAGGCCAUGGUCGUAACGCCGGUUUCCGAGAAACCAUCAGCAGCGACGAUUCCUGUCGCUUUCUAAGGCCAUACAAGUACUUGAAAA-U .....((((..(((......)))((((((...))))))......(((((((.....)))))))......))))...(((....)))....-. ( -25.90) >DroEre_CAF1 3374 90 + 1 AAUCAGGCCAUGGUCGUAACGCCGGUUUCUGAGAAACCCUCAGCAGCGACAGUCGCCGUCGCUUUCUAAGGCCAUAAACGUACUUAA-AA-C .....((((.((((......))))....(((((.....))))).((((((.......))))))......))))..............-..-. ( -24.40) >DroYak_CAF1 3305 91 + 1 AAUCAGGCCAUGGUCGUAACGCCAGUUUCUGAGAAACCCUCAGCAGCGACAGUUGCCGUCGCCUUCUAAGGCCAUACAAGUACUUAAAAA-C .....((((.((((......))))....(((((.....)))))..(((((.......))))).......)))).................-. ( -24.10) >DroAna_CAF1 3604 88 + 1 AACCAGGCCAUGGUCGUAACCCCGGUUUCCGAGAAACCCACAUCCGUGGCAGC---GGCUGCCUUCUAA-GCCAUACAAACCCUGAAGAACC ...((((((((((..((......((((((...)))))).))..)))))))...---((((........)-))).........)))....... ( -26.60) >consensus AAUCAGGCCAUGGUCGUAACGCCGGUUUCCGAGAAACCCUCAGCAGCGACAAUUCCCGUCGCUUUCUAAGGCCAUACAAGUACUUAAAAA_C .....((((..(((......)))((((((...)))))).......(((((.......))))).......))))................... (-21.17 = -21.12 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:28 2006