Locus 6568

Sequence ID 2L_DroMel_CAF1
Location 18,470,391 – 18,470,493
Length 102
Max. P 0.633525
window10481

overview

Window 1

Location 18,470,391 – 18,470,493
Length 102
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -36.82
Consensus MFE -19.21
Energy contribution -21.69
Covariance contribution 2.48
Combinations/Pair 1.26
Mean z-score -2.10
Structure conservation index 0.52
SVM decision value 0.21
SVM RNA-class probability 0.633525
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18470391 102 - 22407834
AGGGCCAAGGAGAAAGCUCGUCUGCGAAAAACUCAGCAGAAGGAAGCCGCAGAGGCUGCCAAUGGAAAC---------GGUAAUCUGCUUUGUGGCACCAAUUCCCACUGC
.((((((..(((.....(((....)))....)))((((((.((.((((.....)))).))..((....)---------)....))))))...)))).))............ ( -32.70)
>DroSec_CAF1 29293 102 - 1
AGGGCCAAGGAGAAAGCUCGUCUGCGAAAAACUCAGCAGAAGGAAGCCGCAGAGGCUGCCAAUGGAAAC---------GGUAGUCUGCUUUGUGGCACCAAUUCCCACUGC
.(((((...(((....))).(((((((.....)).))))).))..(((((((((((((((...(....)---------))))))...))))))))).......)))..... ( -37.50)
>DroEre_CAF1 24538 102 - 1
AGGGCCAAGGAAAAAGCUCGUUUGCGAAAAUCGCAACAGAAGGAAGCCGCAGAGGCUGCCAAUGGAAAC---------GGUAGUCUGCUUUGUGGCACCAAUUCCCACUGC
.(((....((.......((..(((((.....)))))..)).....(((((((((((((((...(....)---------))))))...))))))))).))....)))..... ( -35.80)
>DroWil_CAF1 33109 111 - 1
CGUGCCAAGGAGAAGGCACGCCUACGUAAAUCUCAGCAAAAGGAAGCGGCUGCUGCUGCCAAUGGAGGAGUCAAUAGCAAUGGUCUUCUAUGUGGCACAAGUUCACAUUGU
.((((((...(((((((((.(((.(((...(((........))).(((((....)))))..))).))).))...((....)))))))))...))))))............. ( -33.70)
>DroYak_CAF1 24118 102 - 1
AGGGCCAAGGAGAAGGCUCGCCUGCGAAAAACGCAGCAGAAGGAAGCCGCAGAGGCUGCCAAUGGAAAC---------GGUAGUCUGCUCUGCGGCACCAAUUCCCACUGC
.(((((........)))))...((((.....))))((((..(((((((((((((((((((...(....)---------))))))...))))))))).....))))..)))) ( -46.00)
>DroAna_CAF1 19724 102 - 1
CGCGCCAAGGAAAAGGCUCGUCUGAGGAAAUCCCAGCAGAAGGAAGCCGC------CGCCAAUGGAAACGGGAAC---GGGAGCCUGCUCUGUGGCACCAACUCGCAUUGC
...((((.(((..((((((.((((.((....))...))))......(((.------..((...(....).))..)---))))))))..))).))))............... ( -35.20)
>consensus
AGGGCCAAGGAGAAAGCUCGUCUGCGAAAAACUCAGCAGAAGGAAGCCGCAGAGGCUGCCAAUGGAAAC_________GGUAGUCUGCUUUGUGGCACCAAUUCCCACUGC
.((((..........))))................((((..(((((((((((((((((((..................))))))...))))))))).....))))..)))) (-19.21 = -21.69 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:26 2006