Locus 6563

Sequence ID 2L_DroMel_CAF1
Location 18,462,861 – 18,462,961
Length 100
Max. P 0.653773
window10467

overview

Window 7

Location 18,462,861 – 18,462,961
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 96.72
Mean single sequence MFE -29.56
Consensus MFE -28.62
Energy contribution -28.30
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -1.12
Structure conservation index 0.97
SVM decision value 0.25
SVM RNA-class probability 0.653773
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18462861 100 - 22407834
GUCUUUCACGUAUCUUCGCCGUCUUGGGCUCUUCUU-UGGGCCUGUUGUGACAGCAGGAGAAGAGUAUCUUUGGCUGCGAUUUGUAUCUGCACACUCGUAU
......((.((((..((((.(((..((((((((((.-....(((((((...)))))))))))))))..))..))).))))...)))).))........... ( -29.30)
>DroSec_CAF1 17274 101 - 1
UUCUUCCACGCAUCUUCGCCGUCUUGGGCUCUUCUUUUGGGCCUGUUGUGACAGCAGGAGAAGAGUAUCUUUGGCUGCGAUUUGUAUCUGCACACUCGUAU
.........(((...((((.(((..((((((((((((((...((((....))))))))))))))))..))..))).))))..)))................ ( -30.20)
>DroSim_CAF1 17327 101 - 1
GUCUUCCACGCAUCUUCGCCGUCUUGGGCUCUUCUUUUGGGCCUGUUGUGACAGCAGGAGAAGAGUAUCUUUGGCUGCGAUUUGUAUCUGCACACUCGUAU
.........(((...((((.(((..((((((((((((((...((((....))))))))))))))))..))..))).))))..)))................ ( -30.20)
>DroEre_CAF1 17216 97 - 1
---UUCCACGCAUCUUCGCCGUCUUGGGCUCUUCUU-UGGGCCUGUUGUGACAGCAGGAGAAGAGUAUCUUUGGCUGCGAUUUGUAUCUGCACACUCGUAU
---......(((...((((.(((..((((((((((.-....(((((((...)))))))))))))))..))..))).))))..)))................ ( -30.10)
>DroYak_CAF1 17408 100 - 1
GUCUUCCACGCAUCUUUGCCGUCUUGGGCUCUUCUU-UGGGCCUGUUGUGACAGCAGGAGAAGAGUAUCUUUGGCUGCGAUUUGUAUCUGCACACUCGUAU
.........(((...((((.(((..((((((((((.-....(((((((...)))))))))))))))..))..))).))))..)))................ ( -28.00)
>consensus
GUCUUCCACGCAUCUUCGCCGUCUUGGGCUCUUCUU_UGGGCCUGUUGUGACAGCAGGAGAAGAGUAUCUUUGGCUGCGAUUUGUAUCUGCACACUCGUAU
.........(((...((((.(((..((((((((((......(((((((...)))))))))))))))..))..))).))))..)))................ (-28.62 = -28.30 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:12 2006