Locus 6560

Sequence ID 2L_DroMel_CAF1
Location 18,456,925 – 18,457,025
Length 100
Max. P 0.743032
window10463

overview

Window 3

Location 18,456,925 – 18,457,025
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -21.02
Consensus MFE -18.08
Energy contribution -17.32
Covariance contribution -0.76
Combinations/Pair 1.28
Mean z-score -1.36
Structure conservation index 0.86
SVM decision value 0.45
SVM RNA-class probability 0.743032
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18456925 100 + 22407834
UAAAUGUGUUUAGUUCAAUAACACAACGUUAUGAGAUCCUAUAAUCCGGCAAACACAGACCCUCAAGUGACUUUGCUGAUGUCACAAAUUGCUGGUCAGA
....(((((((..((((.((((.....))))))))..((........)).)))))))((((..((((((((.........)))))...)))..))))... ( -22.10)
>DroSec_CAF1 11399 100 + 1
UAAAUAUGUUUAGUUCAAUAACACAACGUUAUGAGAUCCUAUAAUCCGGCAAACACAGACCCUCAAGUGACUUUGCUGAUGUCACAAAUUGCUGGUCAGA
....((((.....((((.((((.....))))))))....))))..(((((((.....(.....)..(((((.........)))))...)))))))..... ( -18.20)
>DroSim_CAF1 11459 100 + 1
UAAAUAUGUUUAGUUCAAUAACACAACGUUAUGAGAUCCUAUAAUCCGGCAAACACAGACCCUCAAGUGACUUUGCUGAUGUCACAAAUUGCUGGUCAGA
....((((.....((((.((((.....))))))))....))))..(((((((.....(.....)..(((((.........)))))...)))))))..... ( -18.20)
>DroEre_CAF1 10976 97 + 1
UAAAUAUGUAUAUCUCAAUAG---AACGUUAUGAGAUUCUGUAAUCCAGCAAACACAGACCCUCAGGUGACUUUGCUGAUGUCACAAAUUGCUGGUCAGA
...........((((((.(((---....)))))))))((((....(((((((.....(.....)..(((((.........)))))...))))))).)))) ( -22.70)
>DroYak_CAF1 11012 100 + 1
UAAACAUGUGUAGUUCAAUAAUGCAACGUUAUGAGAUCACAUAAUCCAGCAAAUACAGACCCUCAAGUGACUUUGCUGAUGUCACAAAUUGCUGGUCAGA
.....(((((...((((.(((((...)))))))))..)))))...(((((((.....(.....)..(((((.........)))))...)))))))..... ( -23.90)
>consensus
UAAAUAUGUUUAGUUCAAUAACACAACGUUAUGAGAUCCUAUAAUCCGGCAAACACAGACCCUCAAGUGACUUUGCUGAUGUCACAAAUUGCUGGUCAGA
....((((.....((((.((((.....))))))))....))))..(((((((.....(.....)..(((((.........)))))...)))))))..... (-18.08 = -17.32 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:09 2006