Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,957,989 – 1,958,092 |
Length | 103 |
Max. P | 0.594274 |
Location | 1,957,989 – 1,958,092 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -15.50 |
Energy contribution | -15.70 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.80 |
Structure conservation index | 0.57 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1957989 103 + 22407834 GG----------------UAUUCAUAGGAUAAGUUGCAUAUUUCCGAAAUCCACACGAUAUUUUUCCGAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU ..----------------((((.....)))).((((((.(((((((.((((((((..(((((.....((((.....)))))))))..)))))))).)))......)))).))))))... ( -24.00) >DroSec_CAF1 450 103 + 1 GAUUUGAACU----------------GGAUAAGUUGCAUAUUUCCUAAACCCACACGAUAUUUUUCCCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU ..........----------------......((((((.....(((.((((((((..(((((......(((.....))).)))))..))))))))(((....))))))..))))))... ( -24.90) >DroSim_CAF1 4231 119 + 1 GGCUUGAACUGCCAAUGUUAUUCAUAGGAUAAGUUGCAUAUUUCCUAAACCCACACGAUAUUUUUCCCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU (((.......)))....(((((.....)))))((((((.....(((.((((((((..(((((......(((.....))).)))))..))))))))(((....))))))..))))))... ( -30.60) >DroEre_CAF1 9705 110 + 1 GGC---------AUAUCCUAUUCACAUAAUUAGUUGCAUAUUUGCGCAGUACACCAUGUAUUUUUGCGAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU .((---------(...((.(((((((((((.(((((..((((((((.(((((.....)))))..))))))))..)))))....)))))))))))((((....))))))..)))...... ( -32.60) >DroYak_CAF1 7445 110 + 1 UGC---------AUAUCCUACUCAUAUGAUAAGUAGCAUAUUUCCAAGGUGCACAAUAUAUUUUUCGCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGCUUGUAAUAAU (((---------(...((.(((((((((((((((.(........)...((((((...............)))))).)))...))))))))))))((((....))))))..))))..... ( -24.56) >consensus GGC___________AU__UAUUCAUAGGAUAAGUUGCAUAUUUCCGAAAUCCACACGAUAUUUUUCCCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU ................................((((((.....((..((((((((..(((((......(((.....))).)))))..))))))))(((....))).))..))))))... (-15.50 = -15.70 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:09 2006