| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,454,921 – 18,455,018 |
| Length | 97 |
| Max. P | 0.744457 |
| Location | 18,454,921 – 18,455,018 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -16.83 |
| Energy contribution | -16.70 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18454921 97 - 22407834 UGCAGGAUGCACAAAAUCAAUGUCAAAGCCUGCUGAGUUCAGUUUGGUGGGGCAAGGACAUGGGACAUGGAGCAUGGGGCAUGGAGCAUGGGGCAUG (((...((((......((..((((...(((.((((....))))..)))..))))..))((((...((((...))))...))))..))))...))).. ( -27.70) >DroSec_CAF1 9428 76 - 1 UGCAGGAUGCACAAAAUCAAUGUCAAAGCCUGAUGAGUUCAGUUUGGUGGGGCAAGGACAUGAG--------------GCAUG-------GGGCAUA (((...((((......(((.((((...((((.((.((......)).)).))))...))))))).--------------)))).-------..))).. ( -22.30) >DroSim_CAF1 9433 83 - 1 UGCAGGAUGCACAAAAUCAAUGUCAAAGCCUGCUGAGUUCAGUUUGGUGGGGCAAGGACAUGAG--------------GCAUGGGGCAUGGGGCAUA (((...((((.((...(((.((((...((((((((....))))......))))...))))))).--------------...))..))))...))).. ( -23.50) >DroEre_CAF1 8882 76 - 1 UGCAGGAUGCACAAAAUCAAUGUCAAAGCCUGCUGAGUUUAGUUCGGCGGGGCAAGGACAUGGG--------------GCAUGUGGCAUG------- (((.(.((((......(((.((((...((((((((((.....)))))).))))...))))))).--------------)))).).)))..------- ( -26.10) >consensus UGCAGGAUGCACAAAAUCAAUGUCAAAGCCUGCUGAGUUCAGUUUGGUGGGGCAAGGACAUGAG______________GCAUGGGGCAUGGGGCAUA (((..(((.......))).(((((...((((((((((.....)))))).))))...))))).................)))................ (-16.83 = -16.70 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:08 2006