Locus 6557

Sequence ID 2L_DroMel_CAF1
Location 18,452,572 – 18,452,672
Length 100
Max. P 0.561876
window10459

overview

Window 9

Location 18,452,572 – 18,452,672
Length 100
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 88.67
Mean single sequence MFE -20.13
Consensus MFE -13.36
Energy contribution -16.03
Covariance contribution 2.67
Combinations/Pair 1.10
Mean z-score -2.64
Structure conservation index 0.66
SVM decision value 0.06
SVM RNA-class probability 0.561876
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18452572 100 - 22407834
UAGUUCAGCAUUUCAAAUAUAGACUUUUAUACAUUUUUUAAAGGACUUCCCAGA---CCUAUUACAUCCAUUAGAAAGGUAUGGAGAACUCACAAAACGAACA
..((((.................((((............))))((.((((((.(---(((.((..........)).)))).))).))).)).......)))). ( -14.70)
>DroSec_CAF1 7021 103 - 1
CAGUUUAGCAUUUAAAAUGUAGACUUUUAUACAUUUUAAAAAAGUUUUCCUAGUUUUCCUAUUACAUCCAUUAGAAAGGCUUGGAGAACUCACAAAACGAACA
..((((....(((((((((((........)))))))))))..((((((((.((((((.(((..........))).)))))).))))))))........)))). ( -25.90)
>DroSim_CAF1 7059 103 - 1
AAAUUUAGCAUUUAAAAUGUAGACUUUUAUACAUUUUUUAAAAGUUUUCCUAGUUUUCCUAUUACAUCCAUUAGAAAGGCUUGGAGAACUCACAAAACGAACA
.............((((((((........)))))))).....((((((((.((((((.(((..........))).)))))).))))))))............. ( -19.80)
>consensus
AAGUUUAGCAUUUAAAAUGUAGACUUUUAUACAUUUUUUAAAAGUUUUCCUAGUUUUCCUAUUACAUCCAUUAGAAAGGCUUGGAGAACUCACAAAACGAACA
..((((.......((((((((........)))))))).....((((((((.((((((.(((..........))).)))))).))))))))........)))). (-13.36 = -16.03 +   2.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:05 2006