Locus 6556

Sequence ID 2L_DroMel_CAF1
Location 18,450,223 – 18,450,315
Length 92
Max. P 0.530882
window10458

overview

Window 8

Location 18,450,223 – 18,450,315
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 90.22
Mean single sequence MFE -31.83
Consensus MFE -26.02
Energy contribution -26.42
Covariance contribution 0.39
Combinations/Pair 1.15
Mean z-score -1.87
Structure conservation index 0.82
SVM decision value -0.01
SVM RNA-class probability 0.530882
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18450223 92 + 22407834
AUACAUGAGCACAUUGCGUAAUGCCGGCGAUUUGGGGCCAGAUUUUACUCACUUUUGGAACUGGCCGCACAUGCAGGGCGCAUUGUUCAGCA
.....((((((...(((((..(((.....((.((.((((((.(((((........))))))))))).)).)))))..))))).))))))... ( -31.90)
>DroSec_CAF1 4684 92 + 1
AUACAUGAGCGCAUUGCGUAAUGCCGGCACUUUGGGGCCAGGUUUUACUCACUUUUGGAACUGGCCGCACAUGCAGGGCGCAUUGCUCAGCA
.....((((((...(((((....((.(((...((.((((((.(((((........))))))))))).))..))).))))))).))))))... ( -34.30)
>DroSim_CAF1 4684 92 + 1
AUACAUGAGCGCAUUGCGUAAUGCCGGCACUUUGGGGCCAGAUUUUACUCACUUUUGGAACUGGCCGCACAUGCAGGGCGCAUUGCUCAGCA
.....((((((...(((((....((.(((...((.((((((.(((((........))))))))))).))..))).))))))).))))))... ( -34.30)
>DroEre_CAF1 4684 92 + 1
AUACACGACUGCAUUGCGUAAUGCCGGCACUUUGUGGCCAGAUUUUACUCACUUUUGGAACUGGCCGCACAUGCAGGGCGCAUUGUUCAGCA
......((..(((.(((((....((.(((...(((((((((.(((((........))))))))))))))..))).))))))).))))).... ( -31.90)
>DroYak_CAF1 4682 92 + 1
AUACUCGACUGCAUUGCGUAAUGCCGGCACUUUGUGGCCAGAUUUUACUCACUUUUGGAACUGGCCGCACAUGCAGGGCGCAUUGUUCAGCA
......((..(((.(((((....((.(((...(((((((((.(((((........))))))))))))))..))).))))))).))))).... ( -31.90)
>DroAna_CAF1 4466 86 + 1
AUCCACACGUGCAUUGCGUAAUGCCGGCUC---GGGG---GUUUCUACUCACUUCUGGAAGUGGCCGCACAUGCAGGGCGCAUUGUUCAGCA
........(.(((.(((((..(((((((((---((((---((........))))))).....))))).....)))..))))).))).).... ( -26.70)
>consensus
AUACACGAGCGCAUUGCGUAAUGCCGGCACUUUGGGGCCAGAUUUUACUCACUUUUGGAACUGGCCGCACAUGCAGGGCGCAUUGUUCAGCA
..........(((.(((((....((.(((...((.((((((.(((((........))))))))))).))..))).))))))).)))...... (-26.02 = -26.42 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:04 2006