| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,444,405 – 18,444,496 |
| Length | 91 |
| Max. P | 0.948102 |
| Location | 18,444,405 – 18,444,496 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.82 |
| Mean single sequence MFE | -21.65 |
| Consensus MFE | -12.27 |
| Energy contribution | -12.67 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18444405 91 - 22407834 CCAUUCUGCUGGCGUGGAAAAGCAGCAAGAAGAAGCAGUAGCAGCUGCGGAGGCGGAAAGCGAGAAAU-----UAAAUGAAGCGAAAAAAGUUGAA ((.((((((((.(........))))).))))...(((((....)))))))..((.....)).......-----....................... ( -18.50) >DroVir_CAF1 8317 77 - 1 --GCCUUGCUGACACGUCUGAGCUGAAAGAAGAA---GCAGCAGCAGCGGCAGC--AAAGCCUGAAAAACCUGUGGAGG----AG--------ACA --((.((((((...((.(((.((((.........---.))))..))))).))))--)).))........(((....)))----..--------... ( -21.80) >DroSec_CAF1 5365 91 - 1 CCGUUCUGCUGGCGUGGAAAAGCAGCAAGAAGAAGAAGCAGUGGCUGCUGCGGCGGAAAGCGAGAAAU-----UAAAUGAAGCGGAAAAAGUAGUA (((((..(((..(((.(...((((((.................)))))).).)))...)))((....)-----)......)))))........... ( -21.93) >DroSim_CAF1 3855 88 - 1 CCGUUCUGCUGGCGUGGAAAAGCAGCAAGAA---GAAGCAGUGGCUGCUGCGGCGGAAAGCGAGAAAU-----UAAAUGAAGCGGAAAAAGUAGAA (((((..(((..(((.(...((((((.....---.........)))))).).)))...)))((....)-----)......)))))........... ( -22.14) >DroYak_CAF1 3827 88 - 1 CCAUUCUGCUGGCGUGGAAAAGCAGCAAGAAGAA---GCAGCAGCUGCUGCGGCGGAAAGCGAGAAAU-----UAAAUGAAGCGGAAAAAGUGGAA ((((((((((.((........)).((.....(..---(((((....)))))..).....)).......-----.......))))))....)))).. ( -23.90) >consensus CCGUUCUGCUGGCGUGGAAAAGCAGCAAGAAGAAG_AGCAGCAGCUGCUGCGGCGGAAAGCGAGAAAU_____UAAAUGAAGCGGAAAAAGUAGAA ...((((((((...(....).(((((.................)))))..))))))))...................................... (-12.27 = -12.67 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:03 2006