Locus 6554

Sequence ID 2L_DroMel_CAF1
Location 18,441,588 – 18,441,696
Length 108
Max. P 0.589492
window10456

overview

Window 6

Location 18,441,588 – 18,441,696
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -29.20
Consensus MFE -27.42
Energy contribution -27.58
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.16
Structure conservation index 0.94
SVM decision value 0.11
SVM RNA-class probability 0.589492
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18441588 108 + 22407834
UUCUUUUUAUCCUUGUCCUUGCGUUUGCGUUUCUUUUUGGGUUCCGAGCUAGAAUCGGAGCUUGAAGAUUCACUAGAAGAGUCGGAACUGCUGUCCUCUUCACUGGAG
.........(((........(((....)))...((((..((((((((.......))))))))..)))).......((((((.(((.....)))..))))))...))). ( -29.90)
>DroSec_CAF1 2510 108 + 1
UUCUUUUUAUCCUUGUCCUUGCGUUUGCGUUUCUUUUUGGGUUCCGAGCUAGAAUCGGAGCUUGAAGAUUCACUAGAAGAGUCGGAACUGCUGUCCUCUUCACUGGAG
.........(((........(((....)))...((((..((((((((.......))))))))..)))).......((((((.(((.....)))..))))))...))). ( -29.90)
>DroSim_CAF1 1007 108 + 1
UUCUUUUUAUCCUUGUCCUUGCGUUUGCGUUUCUUUUUGGGUUCCGAGCUAGAAUCGGAGCUUGAAGAUUCACUAGAAGAGUCGGAACUGCUGUCCUCUUCACUGGAG
.........(((........(((....)))...((((..((((((((.......))))))))..)))).......((((((.(((.....)))..))))))...))). ( -29.90)
>DroEre_CAF1 1007 108 + 1
UUCUUUUUAUCCUUGUCCUUGCGCUUGCGUUUCUUUUUAGGUUCCGAGCUAGAAUCGGAGCUUGAAGAUUCACUGGAAGACUCGGAACUGCUGUCCUCUUCACUGGAG
.........(((..(((...(((....)))...((((((((((((((.......))))))))))))))..........)))..))).......(((........))). ( -27.70)
>DroYak_CAF1 944 108 + 1
UUAUUUUUAUCCUUGUCCUUGCGUUUGCGUUUCUUUUUAGGUUCCGAGCUGGAAUCGGAGCUUGAUGAUUCACUAGAAGAGUCGGAACUGCUGUCCUCUUCACUGGAG
.........(((........((....))(..((...(((((((((((.......))))))))))).))..)....((((((.(((.....)))..))))))...))). ( -28.60)
>consensus
UUCUUUUUAUCCUUGUCCUUGCGUUUGCGUUUCUUUUUGGGUUCCGAGCUAGAAUCGGAGCUUGAAGAUUCACUAGAAGAGUCGGAACUGCUGUCCUCUUCACUGGAG
.........(((........(((....)))...((((((((((((((.......)))))))))))))).......((((((.(((.....)))..))))))...))). (-27.42 = -27.58 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:02 2006