Locus 6553

Sequence ID 2L_DroMel_CAF1
Location 18,440,755 – 18,440,854
Length 99
Max. P 0.574245
window10455

overview

Window 5

Location 18,440,755 – 18,440,854
Length 99
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 75.98
Mean single sequence MFE -24.83
Consensus MFE -15.84
Energy contribution -16.30
Covariance contribution 0.46
Combinations/Pair 1.23
Mean z-score -1.48
Structure conservation index 0.64
SVM decision value 0.08
SVM RNA-class probability 0.574245
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18440755 99 + 22407834
CACGAUCUGAUCUCUCUCCACGGUCUGAUCUCUCUCCACGGUCUGAUCUUU------------------CUCCGCGGUCCGAUCUCUCUCCACGAUCUGAUCUCUCGUUUCUGGAGG
...((((.((((.........)))).))))...((((((((...((....)------------------).))).((((.((((.........)))).)))).........))))). ( -24.60)
>DroSec_CAF1 1677 99 + 1
CACGUUCUGAUCUCUCUCCACGAUCUGAUCUCUCUCCACGGUCUGAUCUCU------------------CUCCACGAUCUGAUCUCUCUCCGCGGUCUGAUUUCUCGUUUCUGGAGG
...............(((((.((...((..((...((.(((...((((..(------------------(.....))...)))).....))).))...))..)).....))))))). ( -21.50)
>DroEre_CAF1 204 117 + 1
CUCGGUCUGAUCUCUCGCCACGAUCUGAUCUCUCGCCACGAUCUGAUCUGUCGCCACGAUCUGAUCUCUCGCCACGAUCUAAACGCUCACCGCGAUCUGGCCUCUCGUUUCUGGAAG
...((((.((((....((.((((((.((((.........)))).)))).)).))...)))).))))....((((.((((.....((.....))))))))))................ ( -28.40)
>consensus
CACGAUCUGAUCUCUCUCCACGAUCUGAUCUCUCUCCACGGUCUGAUCUCU__________________CUCCACGAUCUGAUCUCUCUCCGCGAUCUGAUCUCUCGUUUCUGGAGG
...((((.((((.........)))).)))).........((((.((((...........................)))).))))...(((((.((..(((....)))..))))))). (-15.84 = -16.30 +   0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:01 2006