Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,439,096 – 18,439,210 |
Length | 114 |
Max. P | 0.870576 |
Location | 18,439,096 – 18,439,210 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 97.37 |
Mean single sequence MFE | -31.31 |
Consensus MFE | -29.58 |
Energy contribution | -29.84 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -2.04 |
Structure conservation index | 0.94 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18439096 114 + 22407834 CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACGCACCCGGCGAAACUCGGAUAAACGGCCUAAAAAAUACCUAGCC ....(((((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..)))(.....)))))....(((..............))) ( -30.35) >DroSim_CAF1 291415 114 + 1 CUAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACGCACCCGGCGAAACUCGGAUAAACGGCCUAAAAAAUACCUAGCC ....(((((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..)))(.....)))))....(((..............))) ( -30.35) >DroEre_CAF1 277986 114 + 1 CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACACACCCGGCGAAACUCGAAUAAACGGGCUAAAAAAUACCGAGCC ........((((........(((.((((((((((((((((.....))))).............))))))))))).)))((.....)).......))))................ ( -31.31) >DroYak_CAF1 292976 114 + 1 CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACACACCCGGCGAAACUCGGAUAAACGGGCUAAAAAAUACCGAGCC .......((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..))))...(((((...................))))).. ( -33.22) >consensus CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACACACCCGGCGAAACUCGGAUAAACGGCCUAAAAAAUACCGAGCC .......((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..))))...((((......))))................. (-29.58 = -29.84 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:00 2006