Locus 6551

Sequence ID 2L_DroMel_CAF1
Location 18,438,873 – 18,438,984
Length 111
Max. P 0.972548
window10453

overview

Window 3

Location 18,438,873 – 18,438,984
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 95.98
Mean single sequence MFE -44.83
Consensus MFE -43.38
Energy contribution -42.63
Covariance contribution -0.75
Combinations/Pair 1.17
Mean z-score -1.26
Structure conservation index 0.97
SVM decision value 1.69
SVM RNA-class probability 0.972548
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18438873 111 + 22407834
CGAACUUCUUGAUUGCCUUGUCCUUGGGCACGCAGCGGGCGCAGUUGGUGCAGCGCACGGGCUUCACAUGGCCGCGAUUGUGCUUGUUGCGUCCUCCGUUACGGCGCUUCU
..........((.((((.((.....(((.((((((((((((((((((((((...)))).((((......)))).)))))))))))))))))))))....)).))))..)). ( -47.00)
>DroGri_CAF1 333054 111 + 1
CAAACUUCUUGAUGGCCUUGUCCUUGGGCACACAACGGGCACAGUUGGUGCAGCGCACGGGCUUCACAUGGCCGCGAUUGUGCUUGUUGCGUCCACCAUUGCGACGCUUCU
..........((.(((.((((...((((.((.(((((((((((((((((((...)))).((((......)))).))))))))))))))).)).).)))..)))).))))). ( -43.60)
>DroSec_CAF1 277422 111 + 1
CGAACUUCUUGAUUGCCUUGUCCUUGGGCACGCAGCGGGCGCAGUUGGUGCAGCGCACGGGCUUCACAUGGCCGCGGUUGUGCUUGUUGCGUCCUCCGUUACGGCGCUUCU
..........((.((((.((.....(((.(((((((((((((((..(((((...)))).((((......)))).)..))))))))))))))))))....)).))))..)). ( -44.50)
>DroSim_CAF1 291192 111 + 1
CGAACUUCUUGAUUGCCUUGUCCUUGGGCACGCAGCGGGCGCAGUUGGUGCAGCGCACGGGCUUCACAUGGCCGCGGUUGUGCUUGUUGCGUCCUCCGUUACGGCGCUUCU
..........((.((((.((.....(((.(((((((((((((((..(((((...)))).((((......)))).)..))))))))))))))))))....)).))))..)). ( -44.50)
>DroEre_CAF1 277761 111 + 1
CGAACUUCUUGAUAGCCUUGUCCUUGGGCACGCAGCGGGCGCAGUUGGUGCAACGCACGGGCUUCACAUGGCCGCGGUUGUGCUUGUUGCGUCCUCCGUUACGGCGCUUCU
..........((..(((.((.....(((.(((((((((((((((..(((((...)))).((((......)))).)..))))))))))))))))))....)).)))...)). ( -44.70)
>DroYak_CAF1 292751 111 + 1
CGAACUUCUUGAUAGCCUUGUCCUUGGGCACGCAGCGGGCGCAGUUGGUGCAACGCACGGGCUUCACAUGGCCGCGGUUGUGCUUGUUGCGUCCUCCGUUACGGCGCUUCU
..........((..(((.((.....(((.(((((((((((((((..(((((...)))).((((......)))).)..))))))))))))))))))....)).)))...)). ( -44.70)
>consensus
CGAACUUCUUGAUUGCCUUGUCCUUGGGCACGCAGCGGGCGCAGUUGGUGCAGCGCACGGGCUUCACAUGGCCGCGGUUGUGCUUGUUGCGUCCUCCGUUACGGCGCUUCU
..............((.((((...((((.((((((((((((((((((((((...)))).((((......)))).)))))))))))))))))).).)))..)))).)).... (-43.38 = -42.63 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:59 2006